| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,163,094 | Δ3 bp | coding (2239‑2241/4029 nt) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4163094 | 4163096 | 3 | 54 [0] | [0] 55 | rpoB | DNA‑directed RNA polymerase subunit beta |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4163093 | 0 (0.000) | 54 (1.010) | 42/150 | 0.2 | 100% | coding (2238/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | REL606 | 4163097 = | 0 (0.000) | coding (2242/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
TGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAGGTATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTG > REL606/4163021‑4163168 | tgtCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatc < 2:950730‑M1/76‑4 (MQ=255) gtCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcg > 2:1030267‑M1/1‑72 (MQ=255) cGTTCAGTACGTGGATGCTTCCCGTATCGCTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgac < 2:292156‑M1/76‑7 (MQ=255) ttCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacat > 1:89233‑M1/1‑68 (MQ=255) tCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatc > 1:899270‑M1/1‑67 (MQ=255) cAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatct < 1:429222‑M1/76‑11 (MQ=255) cAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGAAatcgacatct > 2:190190‑M1/1‑66 (MQ=255) aGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatcta > 1:404625‑M1/1‑65 (MQ=255) tGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacct > 2:1580900‑M1/1‑59 (MQ=255) aTGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgac > 1:620815‑M1/1‑56 (MQ=255) aTGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgac < 1:1060440‑M1/76‑21 (MQ=255) tGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgacc < 1:1331593‑M1/76‑22 (MQ=255) cGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaataca < 2:1548577‑M1/76‑29 (MQ=255) tATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacc > 2:792543‑M1/1‑46 (MQ=255) tATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacc > 2:616868‑M1/1‑46 (MQ=255) aTCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacaccc > 1:342797‑M1/1‑45 (MQ=255) aTCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacaccc > 2:1337698‑M1/1‑45 (MQ=255) cGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgt > 1:67174‑M1/1‑43 (MQ=255) gTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgtt > 1:1233402‑M1/1‑42 (MQ=255) gTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgtt < 2:899088‑M1/76‑35 (MQ=255) ttATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttc > 2:695701‑M1/1‑41 (MQ=255) tATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttct > 1:1291712‑M1/1‑40 (MQ=255) aTCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttcta > 2:1049343‑M1/1‑39 (MQ=255) aTCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttcta < 1:12292‑M1/76‑38 (MQ=255) aaaGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaacc > 2:1074510‑M1/1‑36 (MQ=255) aaGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaacca > 2:1203931‑M1/1‑35 (MQ=255) aGTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccag < 1:696159‑M1/76‑43 (MQ=255) gTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctggccaaatacacccgttctaaccaga < 2:699627‑M1/76‑44 (MQ=255) gTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccaga < 2:699616‑M1/76‑44 (MQ=255) gTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccaga < 1:179742‑M1/76‑44 (MQ=255) gTTAACGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccaga < 2:1650460‑M1/76‑44 (MQ=255) tAACGAAGACGAGATGTATCCGGGTGACGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaac > 2:1512761‑M1/1‑31 (MQ=255) aaCGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaaca < 2:1206142‑M1/76‑47 (MQ=255) aaCGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaaca > 1:1349772‑M1/1‑30 (MQ=255) aCGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacac < 2:1380216‑M1/76‑48 (MQ=255) aCGAAGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacac < 2:375990‑M1/76‑48 (MQ=255) aaGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctg < 2:801193‑M1/76‑51 (MQ=255) aaGACGAGATGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctg < 1:1545712‑M1/76‑51 (MQ=255) gagaTGTATCCGGGTGAAGCGatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatca < 1:557088‑M1/76‑56 (MQ=255) gagaTGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatca < 1:151737‑M1/76‑56 (MQ=255) agaTGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaa < 1:1497081‑M1/76‑57 (MQ=255) aTGTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaacc > 1:43480‑M1/1‑18 (MQ=255) gTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccag > 1:495274‑M1/1‑16 (MQ=255) gTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccag < 1:430011‑M1/76‑61 (MQ=255) gTATCCGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccag < 2:1299743‑M1/76‑61 (MQ=255) ccGGGTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgc < 2:1129927‑M1/76‑65 (MQ=255) gggTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccg > 2:1607841‑M1/1‑10 (MQ=255) gggTGAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccg > 2:763664‑M1/1‑10 (MQ=255) gAAGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtg < 2:686506‑M1/76‑71 (MQ=255) aaGCAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtgt > 2:1349999‑M1/1‑5 (MQ=255) cAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtgtgtc > 1:1269408‑M1/1‑2 (MQ=255) cAatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtgtgtc > 1:1233467‑M1/1‑2 (MQ=255) aatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtgtgtct > 1:1621195‑M1/1‑1 (MQ=255) aatcgacatctacaacctgaccaaatacacccgttctaaccagaacacctgtatcaaccagatgccgtgtgtgtct > 1:814791‑M1/1‑1 (MQ=255) | TGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAGGTATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTG > REL606/4163021‑4163168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |