| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 433,502 | (AAGAG)2→1 | [hupB] | [hupB] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 433501 = | 2 (0.040) | 46 (0.940) | 35/138 | 0.4 | 96.0% | intergenic (+204/‑5) | lon/hupB | DNA‑binding ATP‑dependent protease La/HU, DNA‑binding transcriptional regulator, beta subunit |
| ? | REL606 | = 433495 | 2 (0.040) | intergenic (+198/‑11) | lon/hupB | DNA‑binding ATP‑dependent protease La/HU, DNA‑binding transcriptional regulator, beta subunit | |||||
GGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCTGGCCGTG > REL606/433427‑433575 | gggatggctggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGa > 1:1169188‑M1/75‑76 (MQ=255) ggatggctggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGaa > 1:291004‑M1/74‑76 (MQ=255) ggctggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGt < 1:1184752‑M1/7‑1 (MQ=255) gctggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTg > 1:569969‑M1/69‑76 (MQ=255) ggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAAt > 2:1602838‑M1/66‑76 (MQ=255) ggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAAt < 1:764612‑M1/11‑1 (MQ=255) ggcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAAt > 1:1629050‑M1/66‑76 (MQ=255) gcctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATa > 1:417258‑M1/65‑76 (MQ=255) cctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATaa > 2:302297‑M1/64‑76 (MQ=255) cctgatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATaa > 2:765645‑M1/64‑76 (MQ=255) gatataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAAtc < 1:429551‑M1/16‑1 (MQ=255) atataactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAAtct < 1:868867‑M1/17‑1 (MQ=255) taactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCaa < 1:1579119‑M1/20‑1 (MQ=255) aactgctgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAAt > 2:1469994‑M1/56‑76 (MQ=255) tgcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCg < 1:948635‑M1/27‑1 (MQ=255) gcgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGa < 2:662815‑M1/28‑1 (MQ=255) cgcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGAc > 1:1216363‑M1/48‑76 (MQ=255) gcgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACa > 1:179495‑M1/47‑76 (MQ=255) cgttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACaa < 1:202654‑M1/31‑1 (MQ=255) tACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATAAATCTCAATTGATCGACAAg > 1:337297/1‑76 (MQ=255) ttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGa < 2:792230‑M1/33‑1 (MQ=255) ttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGa > 1:345801‑M1/44‑76 (MQ=255) ttcgtaccttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGa < 2:1628475‑M1/33‑1 (MQ=255) ttgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCa < 1:106546‑M1/41‑1 (MQ=255) tgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAg < 2:206567‑M1/42‑1 (MQ=255) tgaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAg < 2:265365‑M1/42‑1 (MQ=255) gaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAgg > 1:295766‑M1/34‑76 (MQ=255) gaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAgg > 1:942366‑M1/34‑76 (MQ=255) gaaggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAgg > 1:147689‑M1/34‑76 (MQ=255) aggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAgggg > 2:800099‑M1/32‑76 (MQ=255) aggattcaagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAgggg > 2:409566‑M1/32‑76 (MQ=255) aagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGatat < 1:1599008‑M1/52‑1 (MQ=255) aagtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGatat > 2:148050‑M1/25‑76 (MQ=255) gtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATAtct > 1:318496‑M1/23‑76 (MQ=255) gtgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATAtct > 1:28471‑M1/23‑76 (MQ=255) tgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATAtctc < 1:694199‑M1/55‑1 (MQ=255) tgcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATAtctc < 2:1378173‑M1/55‑1 (MQ=255) gcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATctct > 2:837148‑M1/21‑76 (MQ=255) gcgatataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATctct > 2:241051‑M1/21‑76 (MQ=255) atataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTaaa < 1:1137506‑M1/59‑1 (MQ=255) atataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTaaa > 1:484315‑M1/18‑76 (MQ=255) ataaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGc < 1:252580‑M1/61‑1 (MQ=255) taaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCt > 1:1213415‑M1/15‑76 (MQ=255) aaattataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTg > 2:948635‑M1/14‑76 (MQ=255) aaaGAGGAAGAGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCg > 2:630009/1‑76 (MQ=255) ttataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCgg < 2:1439223‑M1/66‑1 (MQ=255) ataaagagGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCt < 2:579868‑M1/68‑1 (MQ=255) gGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCTGGCCGTg > 2:330239‑M1/2‑76 (MQ=255) gGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCTGGCCGTg > 2:67721‑M1/2‑76 (MQ=255) gGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCTGGCCGTg < 1:1487347‑M1/75‑1 (MQ=255) | GGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAGTGAATAAATCTCAATTGATCGACAAGATTGCTGCAGGGGCTGATATCTCTAAAGCTGCGGCTGGCCGTG > REL606/433427‑433575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |