| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3014207 = | 6 (0.100) | 53 (0.860) | 42/150 | 0.4 | 89.8% | coding (788/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 | = 3014214 | NA (NA) | coding (795/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE | |||||
TCACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014279‑3014207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCT < REL606/3014214‑3014141 TCACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATT > 2:1376009/1‑76TCACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATT < 2:127001/76‑1 ACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTAC < 2:451447/76‑1 ACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTAC < 2:1795930/76‑1 TGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGC > 2:804340/1‑76 TGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGC > 1:930369/1‑76 CGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCA > 2:1396250/1‑76 GCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCAC > 1:673737/1‑76 TGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTTACAA < 2:1557685/76‑1 TGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAA < 1:351469/76‑1 GTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAAC > 2:1840951/1‑76 GTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAAC > 1:880526/1‑76 ATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTG < 2:968064/76‑1 TTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCG > 1:173037/1‑76 CTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACACGATTACGCGCACTCACAACTTGCGGGGC > 2:335051/1‑76 TTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGT > 1:1031755/1‑76 TTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGT > 1:1638712/1‑76 TTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCT < 1:790100/76‑1 TTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCT < 2:421547/76‑1 TCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTC < 1:213949/76‑1 CTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCA > 1:1414443/1‑76 GTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCA > 2:831617/1‑76 GTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCA > 2:1735814/1‑76 CAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGA > 1:1744796/1‑76 CAATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGA > 2:512108/1‑76 ATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATA < 1:1374496/76‑1 ATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATA < 1:1811354/76‑1 ATTTGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATA > 1:1447746/1‑76 TTGTGCCTGCAATGAGTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACG > 1:135429/1‑76 TGTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGT > 1:1159674/1‑76 GTGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTC < 2:785669/76‑1 TGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCA < 2:337553/76‑1 TGCCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCA > 1:341452/1‑76 CCTGCAATGACTGAATCGCATTGCGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGC < 1:1084825/76‑1 CCTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGC < 1:1439344/76‑1 CTGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCA > 2:92882/1‑76 TGCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAA > 2:1570844/1‑76 GCAATGACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAG < 1:526534/76‑1 ACTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGC < 1:640849/76‑1 CTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCA > 1:1500591/1‑76 CTGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCA < 2:56082/76‑1 TGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCACGCTCCGCAG > 1:274160/1‑76 TGAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAG < 2:1761983/76‑1 GAATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGG > 2:1187979/1‑76 ATCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTC > 1:205349/1‑76 TCGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCC < 1:1633494/76‑1 CGCATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCG < 1:232911/76‑1 CATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCT > 1:536478/1‑76 ATTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGCCAGCAAGTTCCGCAGGTCCGCTT > 2:1777720/1‑76 TTACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCTcc < 2:762728/76‑3 ACGCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGNAAGTTCCGCAGGTCCGCTTCCA < 2:256422/76‑1 GCGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCTTCCATC > 2:1431600/1‑76 CGATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCT > 2:200508/1‑76 TCACCCTGCGGCGCTGTGATTTTGCTTTTTTCTTCGTCAATTTGTGCCTGCAATGACTGAATCGCATTACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014279‑3014207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTACGCGCACTCACAACTTGCGGGGCGTCCTCACGCAGATACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCT < REL606/3014214‑3014141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |