| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3014207 = | 6 (0.100) | 53 (0.860) | 42/150 | 0.4 | 89.8% | coding (788/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 | = 3014214 | NA (NA) | coding (795/1137 nt) | ECB_02815 | Capsule polysaccharide export inner‑membrane protein kpsE | |||||
AGAAGATCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTGCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGACAA > REL606/3014132‑3014282 | agaagaTCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTgc > 2:861017/1‑76 (MQ=255) agatggaagcggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatcg > 2:200508‑M1/75‑76 (MQ=255) gatggaagcggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatcgc > 2:1431600‑M1/74‑76 (MQ=255) aagaTCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTgcgc < 1:1526885/76‑1 (MQ=255) aagaTCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTgcgc < 1:163328/76‑1 (MQ=255) tggaagcggacctgcggaacttnctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatcgcgt < 2:256422‑M1/5‑1 (MQ=255) gaTCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTGCGCGt > 1:22291/1‑76 (MQ=255) gaTCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTGCGCGt < 1:1907881/76‑1 (MQ=255) tCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTGCGCGTaa < 2:1528507/76‑1 (MQ=255) ggagcggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatcgcgtaa < 2:762728‑M1/7‑1 (MQ=255) aagcggacctgcggaacttgctggcgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatcgcgtaat > 2:1777720‑M1/69‑76 (MQ=255) agcggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATg > 1:536478‑M1/68‑76 (MQ=255) cggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCg < 1:232911‑M1/11‑1 (MQ=255) ggacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGa < 1:1633494‑M1/12‑1 (MQ=255) gacctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGAt > 1:205349‑M1/64‑76 (MQ=255) cctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTc > 2:1187979‑M1/62‑76 (MQ=255) ctgcggagcgtgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCa > 1:274160‑M1/61‑76 (MQ=255) ctgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCa < 2:1761983‑M1/16‑1 (MQ=255) tgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAg < 2:56082‑M1/17‑1 (MQ=255) tgcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAg > 1:1500591‑M1/60‑76 (MQ=255) gcggaacttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGt < 1:640849‑M1/18‑1 (MQ=255) cttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGc < 1:526534‑M1/24‑1 (MQ=255) ttgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCa > 2:1570844‑M1/52‑76 (MQ=255) tgctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAg > 2:92882‑M1/51‑76 (MQ=255) gctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAgg < 1:1439344‑M1/27‑1 (MQ=255) gctgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGCAATGCGATTCAGTCATTGCAgg < 1:1084825‑M1/27‑1 (MQ=255) tgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGca > 1:341452‑M1/48‑76 (MQ=255) tgacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGca < 2:337553‑M1/29‑1 (MQ=255) gacgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGcac < 2:785669‑M1/30‑1 (MQ=255) acgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGcaca > 1:1159674‑M1/46‑76 (MQ=255) cgtatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCACTCATTGCAGGCACaa > 1:135429‑M1/45‑76 (MQ=255) tatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAAt < 1:1811354‑M1/34‑1 (MQ=255) tatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAAt > 1:1447746‑M1/43‑76 (MQ=255) tatctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAAt < 1:1374496‑M1/34‑1 (MQ=255) tctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTg > 1:1744796‑M1/41‑76 (MQ=255) tctgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTg > 2:512108‑M1/41‑76 (MQ=255) tgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGAc > 2:831617‑M1/39‑76 (MQ=255) tgcgtgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGAc > 2:1735814‑M1/39‑76 (MQ=255) tgaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACgaag > 1:1414443‑M1/35‑76 (MQ=255) gaggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACgaaga < 1:213949‑M1/43‑1 (MQ=255) aggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACgaagaa < 2:421547‑M1/44‑1 (MQ=255) aggacgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACgaagaa < 1:790100‑M1/44‑1 (MQ=255) acgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGaaaaa > 1:1638712‑M1/30‑76 (MQ=255) acgccccgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGaaaaa > 1:1031755‑M1/30‑76 (MQ=255) gccccgcaagttgtgagtgcgcgtaatCGTGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAg > 2:335051‑M1/28‑76 (MQ=255) cgcaagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCaaa > 1:173037‑M1/24‑76 (MQ=255) caagttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAAt < 2:968064‑M1/55‑1 (MQ=255) gttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATcac > 2:1840951‑M1/19‑76 (MQ=255) gttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATcac > 1:880526‑M1/19‑76 (MQ=255) ttgtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATcaca < 1:351469‑M1/59‑1 (MQ=255) ttgtaagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATcaca < 2:1557685‑M1/59‑1 (MQ=255) gtgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAgc > 1:673737‑M1/16‑76 (MQ=255) tgagtgcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAgcg > 2:1396250‑M1/15‑76 (MQ=255) gcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCa > 1:930369‑M1/10‑76 (MQ=255) gcgcgtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCa > 2:804340‑M1/10‑76 (MQ=255) gtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGt < 2:451447‑M1/71‑1 (MQ=255) gtaatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGt < 2:1795930‑M1/71‑1 (MQ=255) aatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGa < 2:127001‑M1/73‑1 (MQ=255) aatCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGa > 2:1376009‑M1/4‑76 (MQ=255) cgcgTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGACaa < 1:1295811/76‑1 (MQ=255) cgcgTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGACaa < 1:109538/76‑1 (MQ=255) | AGAAGATCCAGATGGAAGCGGACCTGCGGAACTTGCTGACGTATCTGCGTGAGGACGCCCCGCAAGTTGTGAGTGCGCGTAATGCGATTCAGTCATTGCAGGCACAAATTGACGAAGAAAAAAGCAAAATCACAGCGCCGCAGGGTGACAA > REL606/3014132‑3014282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |