| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737289 = | 92 (1.310) | 3 (0.050) | 3/138 | 8.2 | 3.2% | coding (538/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | 3737758 = | 97 (1.510) | coding (69/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737365‑3737289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaaAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTT > REL606/3737758‑3737832 TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA < 1:1760200/76‑1TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA > 1:2129612/1‑76TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA < 1:984463/76‑1TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA < 2:548679/76‑1TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA > 2:1572122/1‑76TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCA < 2:256155/76‑1 GACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA > 1:1677997/1‑76 GACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA < 2:118518/76‑1 GACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA > 2:356759/1‑76 GACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA < 2:2205155/76‑1 GTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAA < 2:678501/76‑1 CCACGCTACAACAGCAGGCTACAGCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAA < 2:1764803/76‑1 GCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAAAGAAAAAATACATAATATGAGAATTAA < 2:215679/76‑1 CATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATA > 2:947416/1‑76 CATCAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATA > 2:770419/1‑76 CAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAT > 2:1723715/1‑76 CAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAT > 2:1532061/1‑76 CAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAT > 2:1158655/1‑76 CAAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATAT > 1:1117981/1‑76 AAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATT > 2:1174713/1‑76 AAAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATT < 1:56955/76‑1 AAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTT > 2:2190581/1‑76 TGACCGTGTTGCATTATCAGCTTCCCACGCTACAACAGCAGGCTACATCATCCTTTTCCCTTCTTTACTGGCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737365‑3737289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaaAGAAAAAATACATAATATGAGAATTAAAGACTTTATACCAGAATTAATTTCATTCCAACAAAATGACATATATTT > REL606/3737758‑3737832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |