| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 50 (0.770) | 6 (0.100) | 4/136 | 7.6 | 10.2% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 61 (1.030) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041133‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAAC > REL606/2041468‑2041541 CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATA > 1:880785/1‑76 ATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATAT > 2:1355723/1‑76 TTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATA > 2:1344400/1‑76 TTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAA < 2:622764/76‑1 ACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTT < 2:1758860/76‑1 TTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAAT < 2:85816/76‑1 TGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATT < 2:111565/76‑1 TGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAATGGCATTTAATAAAATAGTAAATATT < 2:1718841/76‑1 TGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAAGGATGGATATAATGGCATTTAATAAAATAGTAAATATT < 2:812757/76‑1 GAATTGACTTACGCCTGTCTTTGTTGATATTGAAAAGGATGGATATAATGGCATTTAATAAAATAGTAAATATTAT < 2:1505765/76‑1 ATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTT > 1:180922/1‑76 TATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTA < 2:490298/76‑1 ATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAAC < 1:1755323/76‑1 CATTTGTTGCAACTTCACATGCTATTTTATGGAATGGACTTACGCCTGTCTTTGTTGATATTGAAAATGATGGATATAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041133‑2041054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atataatGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAAC > REL606/2041468‑2041541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |