| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 50 (0.770) | 6 (0.100) | 4/136 | 7.6 | 10.2% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 61 (1.030) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040980‑2041128 | gtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAatat > 1:1115154/1‑76 (MQ=255) tGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatta < 1:630705/76‑1 (MQ=255) tGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatta > 2:444735/1‑76 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc > 1:205770/1‑76 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc > 1:1496687/1‑76 (MQ=255) aGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc < 1:13298/76‑1 (MQ=255) aaTGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcatc > 2:130841/1‑76 (MQ=255) tGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCTTGTTCTATTTTTCTGTAATCAATATTATATCcatcat > 2:2030953/1‑76 (MQ=255) ggACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtt < 2:1081647/76‑1 (MQ=255) ggACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtt < 2:1081635/76‑1 (MQ=255) tAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAata > 1:1355723/1‑76 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat > 2:628732/1‑76 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat > 2:162339/1‑76 (MQ=255) aTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaa < 2:952514/76‑1 (MQ=255) tGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaaca < 2:913885/76‑1 (MQ=255) gAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGa < 1:1332611/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:1471822/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:1471821/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa > 1:1716503/1‑76 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa > 1:201428/1‑76 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:939568/76‑1 (MQ=255) gTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACan < 1:1837565/76‑2 (MQ=255) gTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAg < 1:540028/76‑1 (MQ=255) ttttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGc > 1:861747/1‑76 (MQ=255) tttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCg > 1:1213877/1‑76 (MQ=255) tttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCg > 1:1213899/1‑76 (MQ=255) ttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGt < 2:1310669/76‑1 (MQ=255) gtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtc > 1:1486651/1‑76 (MQ=255) tAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtcc < 1:120755/76‑1 (MQ=255) aTAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat > 2:245264/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACATAGACAGGCGTAAGtccattccat > 2:1320103/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat > 2:1373318/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat > 2:1373345/1‑76 (MQ=255) cTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat > 1:1654906/1‑76 (MQ=255) tGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATa > 1:279705/1‑76 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa < 2:677794/76‑1 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 2:1059792/1‑76 (MQ=255) cTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAAt < 1:1735183/76‑1 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa > 2:1542444/1‑76 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa > 2:456922/1‑76 (MQ=255) tttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGc > 1:118227/1‑76 (MQ=255) ttttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCa > 2:95770/1‑76 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgtg > 2:1178288/1‑76 (MQ=255) tGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGa < 1:506310/76‑1 (MQ=255) tAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAg > 2:973493/1‑76 (MQ=255) aaTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGt > 1:741336/1‑76 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc < 2:332854/76‑1 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc > 1:1945280/1‑76 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc < 1:1716264/76‑1 (MQ=255) tattatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaac > 1:1703141/1‑76 (MQ=255) | GTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040980‑2041128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |