| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 1,881,180 | Δ10 bp | coding (554‑563/972 nt) | manX → | fused mannose‑specific PTS enzymes: IIA component/IIB component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1881179 | 3 (0.050) | 54 (0.830) | 44/150 | 0.4 | 94.7% | coding (553/972 nt) | manX | fused mannose‑specific PTS enzymes: IIA component/IIB component |
| ? | REL606 | 1881190 = | 3 (0.050) | coding (564/972 nt) | manX | fused mannose‑specific PTS enzymes: IIA component/IIB component | |||||
TACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGATACCGTTCGTAAGACACTGCTCAC > REL606/1881107‑1881252 | tACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctc < 1:611215‑M1/76‑4 (MQ=255)tACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctc > 1:391520‑M1/1‑73 (MQ=255) aCATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcc > 1:865657‑M1/1‑72 (MQ=255) aCATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcc > 1:986034‑M1/1‑72 (MQ=255) cATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctccc > 2:206448‑M1/1‑71 (MQ=255) aTGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccg > 1:1744885‑M1/1‑70 (MQ=255) tGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgt < 2:470340‑M1/76‑8 (MQ=255) ttATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtatt < 2:1748466‑M1/76‑11 (MQ=255) ttATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtatt > 2:1349204‑M1/1‑66 (MQ=255) ttATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtatt > 2:1173832‑M1/1‑66 (MQ=255) tATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtatta > 1:622595‑M1/1‑65 (MQ=255) tATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtatca > 2:496211‑M1/1‑65 (MQ=255) tATTGGCCTTGCGCGTATCGACGACCGTCTGATTCAC‑GTCAGGTCGCCACCCGCTGGACGAAAGctcccgtattat < 1:472436‑M1/76‑13 (MQ=255) tGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattg < 2:464025‑M1/76‑15 (MQ=255) ccTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttg > 2:1290300‑M1/1‑59 (MQ=255) cTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgt < 2:1749227‑M1/76‑19 (MQ=255) cTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgt > 2:81629‑M1/1‑58 (MQ=255) cTTGCGCGTATCGACGACCGTCTGATTCACGGCAAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgt > 2:779805‑M1/1‑58 (MQ=255) tGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgtta > 1:490574‑M1/1‑56 (MQ=255) cgcgTATCGACGACCTTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGtattat > 1:985476/1‑76 (MQ=255) cgTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtga > 1:853281‑M1/1‑52 (MQ=255) cgTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTAttg > 1:1271598/1‑76 (MQ=255) gTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgat > 1:1370092‑M1/1‑51 (MQ=255) cgacCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtgg > 2:645634‑M1/1‑44 (MQ=255) gacCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggc < 2:2023278‑M1/76‑34 (MQ=255) gacCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggc > 2:751608‑M1/1‑43 (MQ=255) gacCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggc > 2:1644193‑M1/1‑43 (MQ=255) nccgTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggct > 1:272620‑M1/2‑42 (MQ=255) cGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgc < 2:606885‑M1/76‑37 (MQ=255) cTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcgga > 1:1143604‑M1/1‑37 (MQ=255) tGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggat > 2:198733‑M1/1‑36 (MQ=255) tGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggat < 2:227633‑M1/76‑41 (MQ=255) aCGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgtt > 1:1358020‑M1/1‑30 (MQ=255) cGGTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttc < 1:645873‑M1/76‑48 (MQ=255) ggTCAGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcg < 2:503128‑M1/76‑49 (MQ=255) aGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaag > 2:1570711‑M1/1‑24 (MQ=255) aGGTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaag < 1:1655508‑M1/76‑53 (MQ=255) ggTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaaga > 1:1956994‑M1/1‑23 (MQ=255) gTCGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagac < 2:1441369‑M1/76‑55 (MQ=255) cGCCACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacac > 1:1518506‑M1/1‑20 (MQ=255) ccACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGGGGATCCCGtatg > 2:1075262/1‑73 (MQ=255) cACCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgc > 2:487208‑M1/1‑17 (MQ=255) aCCCGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgct > 2:1759258‑M1/1‑16 (MQ=255) ccGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctca > 2:146228‑M1/1‑14 (MQ=255) cGCTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcac < 1:1699175‑M1/76‑64 (MQ=255) cTGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcaccc > 1:1967178‑M1/1‑11 (MQ=255) tGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcaccca > 2:1665469‑M1/1‑10 (MQ=255) tGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcaccca > 1:12384‑M1/1‑10 (MQ=255) tGGACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacaacgctcaccca > 2:306567‑M1/1‑10 (MQ=255) ggACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccag > 2:1229415‑M1/1‑9 (MQ=255) gACCAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgcgcgtaagacactgctcccccagg > 2:794632‑M1/1‑8 (MQ=255) ccAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccaggtt < 1:1783562‑M1/76‑71 (MQ=255) cAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccaggttg < 1:598751‑M1/76‑72 (MQ=255) cAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccaggttg < 1:1485163‑M1/76‑72 (MQ=255) cAAAGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccaggctg > 2:871179‑M1/1‑5 (MQ=255) aaGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcaccccggttgca > 1:1290648‑M1/1‑3 (MQ=255) aaGctcccgtattattgttgttagtgatgaagtggctgcggataccgttcgtaagacactgctcacccaggttgca > 2:1504363‑M1/1‑3 (MQ=255) | TACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGATACCGTTCGTAAGACACTGCTCAC > REL606/1881107‑1881252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |