| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 28 (0.860) | 26/144 | 0.3 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 32 (0.990) | 28/144 | 0.2 | 96.7% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 1 (0.030) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
AGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACGTCAT > REL606/4524452‑4524601 | catcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCaa < 2:375697‑M2/6‑1 (MQ=255)catcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCaa < 1:375042‑M2/6‑1 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacgcttaagttagcgcttatgggCCGCAAc > 2:517855‑M2/70‑76 (MQ=255) atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAAc > 1:53218‑M2/70‑76 (MQ=255) ttCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcc > 2:418067‑M2/1‑74 (MQ=255) ttCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcc < 1:487127‑M2/76‑3 (MQ=255) tCAGAAACAACCCTGAATAACGGAACCAACGCCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccc < 1:1063841‑M2/76‑4 (MQ=255) cgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAAccc < 1:439128‑M2/9‑1 (MQ=255) gtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAAcccc > 2:69006‑M2/67‑76 (MQ=255) cAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAccca > 2:1036353‑M2/1‑72 (MQ=255) aGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccat < 1:380417‑M2/76‑6 (MQ=255) gAAACTACCCTGAATAACTGTACCTATTCCATTCCGGTCGAGGCGCGTTATTTGAAAACCGGTGCCTCAAcccata < 1:109140/76‑4 (MQ=255) gAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccata > 1:476494‑M2/1‑70 (MQ=255) aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtg > 1:1030506‑M2/62‑76 (MQ=255) acgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtgc > 1:462978‑M2/61‑76 (MQ=255) cgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtgct > 1:538111‑M2/60‑76 (MQ=255) aacCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgc < 1:557234‑M2/76‑12 (MQ=255) gaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtgctg < 2:503273‑M2/18‑1 (MQ=255) gaggcaccgaggcgtcgcattctgcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGtgctg < 2:55014‑M2/18‑1 (MQ=255) acCCTGAATAACGGAATCAATACCATTCCGTTCTAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgct > 2:727289‑M2/1‑64 (MQ=255) acCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgct > 1:408673‑M2/1‑64 (MQ=255) ccTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcactaa > 2:376888‑M2/1‑62 (MQ=255) ccTGAATAACGGAACCAATACAATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaa < 1:462595‑M2/76‑15 (MQ=255) cTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaac < 2:802700‑M2/76‑16 (MQ=255) naccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTaa < 1:924464‑M2/22‑1 (MQ=255) gAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaattt < 1:510603‑M2/76‑18 (MQ=255) gAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactt > 2:4775‑M2/1‑59 (MQ=255) aaTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaactta < 2:861715‑M2/76‑19 (MQ=255) aTAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaa < 2:734588‑M2/76‑20 (MQ=255) gaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCg < 1:273724‑M2/26‑1 (MQ=255) aaCGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagg > 1:612679‑M2/1‑55 (MQ=255) aCGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaaggg < 1:472731‑M2/76‑23 (MQ=255) aaCCAATACCAGTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgt > 2:593554‑M2/1‑50 (MQ=255) tcttcagatggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCAGATGCGACCTTc > 1:799552‑M2/39‑76 (MQ=255) tACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatt > 2:214741‑M2/1‑44 (MQ=255) aCCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtatta > 2:1074505‑M2/1‑43 (MQ=255) aTTCCGTTCCAGGCGCGTTATTTTTCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgc < 2:194052‑M2/76‑37 (MQ=255) ccGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctg > 2:316169‑M2/1‑37 (MQ=255) ggttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAg > 2:204732‑M2/30‑76 (MQ=255) gTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgat < 2:64321‑M2/76‑42 (MQ=255) gttcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGt > 2:879794‑M2/29‑76 (MQ=255) tCCAGGCGCGTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatat < 1:638995‑M2/76‑44 (MQ=255) tcaacccttaagttagcncttatgggCCGCAACCCCGGGTGCTGCTAATGCNCATGAGACCATCAAGGTTCAGTAt > 2:896285‑M2/27‑76 (MQ=255) tcaacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTAt < 2:614444‑M2/50‑1 (MQ=255) caacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc < 2:1059667‑M2/51‑1 (MQ=255) caacccttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATc > 2:5531‑M2/26‑76 (MQ=255) ttaagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAAc < 2:565492‑M2/57‑1 (MQ=255) cgTTATTTTGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaac > 2:476162‑M2/1‑25 (MQ=255) taagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAAcc < 1:315148‑M2/58‑1 (MQ=255) aagttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCt < 2:344267‑M2/59‑1 (MQ=255) tATTTTGCAACCGGGGCCGCAAcctataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtg > 2:802499‑M2/1‑22 (MQ=255) agttagcgcttatgggCCGCCACCCCGGGTGCTGCTAATGCGGATGCGACCGTCAAGGTTCAGTATCAATAACCTa < 1:815178‑M2/60‑1 (MQ=255) agttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCCAGGTTCAGCATCAATAACCTa > 2:567265‑M2/17‑76 (MQ=255) ttttGCAACCGGGGCCGCAAcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcc < 1:601354‑M2/76‑57 (MQ=255) ttagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGCTTCAGTATCAATAACCTAcc > 1:812175‑M2/15‑76 (MQ=255) ttagcgcttatgggCCGCAACCCCGGGTGCTGCGAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTAcc < 1:190987‑M2/62‑1 (MQ=255) tagcgcttatgggCCGCAACCCCGGGTGCTGCTAATGCGGATACGACCTTCAAGGTTCAGTATCAATAACCTAccc > 1:861069‑M2/14‑76 (MQ=255) ttatgggCCGCAACCCCGGGTACTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGCTTc > 2:624850‑M2/8‑76 (MQ=255) tatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTtcn < 1:898105‑M2/70‑2 (MQ=255) tatgggCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCACTATCAATAACCTACCCAGGTTCa < 1:834531‑M2/70‑1 (MQ=255) tatgggCCGCAACCCAGGGTGCTGCTAATGCGGATGCGACCTTCAAGATTCAGTATCAATAACCTACCCAGGTTCa > 2:495339‑M2/7‑76 (MQ=255) cGGGGCCGCAAgccagacgcgctaacttcacggttatggtatnangcctgatntgatttaacgtgccgatgaatta > 1:1001882‑M2/1‑11 (MQ=255) ccGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACg < 1:673961/76‑1 (MQ=255) cGCAAcccataagcgctaacttaagggctgtggtattacgcctgatatgatttaacgtgccgatgaattactctca > 1:650043‑M2/1‑5 (MQ=255) gCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACGTc < 1:157429/76‑1 (MQ=255) aacccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacga > 1:254353‑M2/1‑2 (MQ=255) | AGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACGTCAT > REL606/4524452‑4524601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |