| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,303,175 | Δ1,633 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1303175 | 1304807 | 1633 | 50 [2] | [0] 48 | [oppD]–[cls] | [oppD],oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1303174 | 2 (0.030) | 47 (0.810) | 35/148 | 0.5 | 97.9% | coding (827/1014 nt) | oppD | oligopeptide transporter ATP‑binding component |
| ? | REL606 | 1304808 = | 0 (0.000) | coding (1432/1461 nt) | cls | cardiolipin synthetase | |||||
CGCGCGATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1303105‑1303174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATAT > REL606/1304808‑1304882 CGCGCGATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCT < 2:1545194/76‑1 GCGCGATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTC < 2:838380/76‑1 CGCGATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCG > 1:1023956/1‑76 ATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGA > 1:743682/1‑76 GTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACc > 2:762/1‑75 CTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACG > 1:933843/1‑76 TTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTG > 1:84068/1‑76 AACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATA > 2:101259/1‑76 CCCGTTCATCCTTTTTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAAT < 2:1250875/76‑1 CCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATG > 2:869337/1‑76 TCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACG < 2:1812427/76‑1 CCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTT < 2:1793149/76‑1 CCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTT > 1:490175/1‑76 CCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTT < 2:700734/76‑1 CTTATTCTATCGGTTTGCTCACCGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTA < 1:572278/76‑1 CTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACCGGTTGCCATTATGGAGGTTTTA > 1:561769/1‑76 CTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTA > 1:561757/1‑76 CTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTA < 2:512662/76‑1 TATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGC > 1:1828511/1‑76 ATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCC > 1:1082874/1‑76 ATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAACGGACGTTTTAGCC > 2:818950/1‑76 TATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAA > 2:1208585/1‑76 ATCGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAA < 2:1441652/76‑1 CGGTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACG > 1:1287256/1‑76 GTTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGG < 1:1208585/76‑1 TTTGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGC > 1:763423/1‑76 TGCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCAT > 1:15622/1‑76 GCTCAGCGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATC < 2:1431862/76‑1 GCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATC > 1:845438/1‑76 GCTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGCTTTAGCCATAAACGCGCCTC > 2:760176/1‑76 CTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCG < 2:1508132/76‑1 CTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCG > 2:750834/1‑76 CTCAACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCG > 2:252526/1‑76 AACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGC > 2:1744327/1‑76 AACGCGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGC > 2:12563/1‑76 ggGGTGCCGCGTCTTGGGTCCCTCGGCGACCCGTTGCCATAATGGACTTTTTAGCCATAAACGGGCATCGAGCAGA < 1:402407/74‑1 CGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACTTTTTAGCCATAAACGGGCATCGAGCAGAC < 2:1561729/76‑1 CGGTGCCGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGAC < 2:1192597/76‑1 CGCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAAC < 1:1525704/76‑1 CGCGTCTTGAGCCGCTGGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAAC < 1:270609/76‑1 GCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACG < 2:977466/76‑1 GCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACG < 2:259069/76‑1 GCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACG < 1:1481794/76‑1 GCGTCTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACG < 1:1112983/76‑1 CTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAA < 2:609164/76‑1 CTTGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAA > 1:165577/1‑76 TGAGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAAT > 1:819165/1‑76 AGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATAT > 2:1202780/1‑76 CGCGCGATGTCTTTTATCAACCCGTTCATCCTTATTCTATCGGTTTGCTCAACGCGGTGCCGCGTCTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1303105‑1303174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTCGCTCGGCGACACGTTGCCATAATGGACGTTTTAGCCATAAACGGGCATCGAGCAGACGTGAACGCGAAATAT > REL606/1304808‑1304882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |