| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040022 = | 53 (0.900) | 4 (0.080) | 4/136 | 5.7 | 7.5% | coding (107/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040134 = | 51 (0.960) | intergenic (‑6/+137) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040103‑2040022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcaaaAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA > REL606/2040134‑2040208 TTGATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTA < 1:465974/76‑1TTGATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTA < 2:1837593/76‑1 GATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACG > 2:231541/1‑76 ATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGC > 1:956288/1‑76 TATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCA < 1:1449853/76‑1 GTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAAAATCATCAATCCTTACATTATTC < 2:42934/76‑1 ATTATGGGAAAAGAAAAAGTAACTATATCTGACTACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATA < 2:1033173/76‑1 TATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATT < 2:179948/76‑1 ATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTA < 2:1794277/76‑1 CGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAT < 2:194091/76‑1 GCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATT < 1:437786/76‑1 GCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATT < 2:308925/76‑1 GCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATT < 2:682893/76‑1 AAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTT < 2:1064084/76‑1 AAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA < 1:1284825/76‑1 AAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA < 1:1284840/76‑1 TTGATATACACGATTATATTCATATAGCGGTATATTCTTCAATTATTGGCAAAGGAAAAGTAACTATATCTGACTACGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2040103‑2040022‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcaaaAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA > REL606/2040134‑2040208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |