| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2040022 = | 53 (0.900) | 4 (0.080) | 4/136 | 5.7 | 7.5% | coding (107/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040134 = | 51 (0.960) | intergenic (‑6/+137) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA > REL606/2040060‑2040208 | aatTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCaaaaa > 2:1496275/1‑76 (MQ=255)aatTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCaaaaa > 1:207265/1‑76 (MQ=255)aatTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCaaaaa < 1:1774946/76‑1 (MQ=255)aatTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCaaaaa > 2:1856649/1‑76 (MQ=255) ntGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAatc > 1:1666920/2‑76 (MQ=255) tGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAatca > 2:435461/1‑76 (MQ=255) tGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAatca > 1:1065002/1‑76 (MQ=255) ataCCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCt > 1:1456463/1‑76 (MQ=255) ccGCTATATGAATATAATGGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTAc < 1:1594912/76‑1 (MQ=255) tataTGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACatta > 1:887761/1‑76 (MQ=255) atatGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACattat > 1:56009/1‑76 (MQ=255) tatGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACattatt < 1:990650/76‑1 (MQ=255) tGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTcc > 2:787119/1‑76 (MQ=255) gAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTccc < 2:605800/76‑1 (MQ=255) aaTATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCa < 2:918304/76‑1 (MQ=255) atatAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCaa > 2:1235131/1‑76 (MQ=255) tataATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAAt > 2:901867/1‑76 (MQ=255) cGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAat < 1:339583/76‑1 (MQ=255) gtgtATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAata < 1:1205340/76‑1 (MQ=255) gtgtATATCAACCCCCCCCTCTCCAGCTGAAAACACGCAAAAAGCATCACTCCTTACATTATCCCCAATACTAata < 1:1033173/76‑1 (MQ=255) tgtATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAatat > 1:1403662/1‑76 (MQ=255) gtAAATTAATCCCTCCCCCCCCATCTGAAAACCCGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtatt < 1:179948/76‑1 (MQ=255) tataTCAATTCCCCCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTGAtatta < 1:1794277/76‑1 (MQ=255) tataTCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtatta < 2:1560231/76‑1 (MQ=255) atatCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtattat > 1:1103130/1‑76 (MQ=255) cAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATcaca > 2:1406874/1‑76 (MQ=255) aaTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCacac > 1:1688712/1‑76 (MQ=255) aaTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCacac > 1:729978/1‑76 (MQ=255) aaTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCacac > 2:34074/1‑76 (MQ=255) ccaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCAt < 1:1847962/76‑1 (MQ=255) ccaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCAt < 2:729978/76‑1 (MQ=255) ccaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCAt < 2:800387/76‑1 (MQ=255) ccaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCAt < 1:301101/76‑1 (MQ=255) caccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATa > 2:1019468/1‑76 (MQ=255) accCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaa < 2:184853/76‑1 (MQ=255) accCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaa < 2:184847/76‑1 (MQ=255) ccTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaaaa < 1:1563495/76‑1 (MQ=255) ctctCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaaaaa < 1:470569/76‑1 (MQ=255) tcCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGAt < 1:1832397/76‑1 (MQ=255) tcCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGAt < 1:1832373/76‑1 (MQ=255) ccAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATg > 2:1683257/1‑76 (MQ=255) ccAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATg < 1:870238/76‑1 (MQ=255) ccAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATg < 1:471124/76‑1 (MQ=255) cAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGc > 2:1037858/1‑76 (MQ=255) gCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCt < 1:103082/76‑1 (MQ=255) gAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTAt < 1:1499423/76‑1 (MQ=255) aaaCACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCt < 1:692573/76‑1 (MQ=255) aaaCACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCt < 2:465974/76‑1 (MQ=255) aaCACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTg < 1:1336305/76‑1 (MQ=255) cacGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGat < 1:565395/76‑1 (MQ=255) cacGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGat < 1:354198/76‑1 (MQ=255) cGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGatat < 2:194091/76‑1 (MQ=255) gCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAtt < 2:308925/76‑1 (MQ=255) gCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAtt < 2:682893/76‑1 (MQ=255) gCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAtt < 1:437786/76‑1 (MQ=255) aaaaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAttttt < 2:1064084/76‑1 (MQ=255) aaaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTa < 1:1284840/76‑1 (MQ=255) aaaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTa < 1:1284825/76‑1 (MQ=255) | AATTGAAGAATATACCGCTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTA > REL606/2040060‑2040208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |