| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,826 | Δ7 bp | intergenic (+157/‑32) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145825 | 1 (0.020) | 47 (0.820) | 33/146 | 0.6 | 97.9% | intergenic (+156/‑39) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor |
| ? | REL606 | 3145833 = | 1 (0.020) | intergenic (+164/‑31) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor | |||||
CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145751‑3145825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > REL606/3145833‑3145905 CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCA < 1:1713472/76‑1 CTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAA > 1:1558450/1‑76 TCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAAC < 1:1792157/76‑1 CGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACC > 2:482475/1‑76 CGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACC > 1:1365234/1‑76 TAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTC > 2:979081/1‑76 TAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTC < 2:1625892/76‑1 ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCAT < 1:1176424/76‑1 ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCAT < 1:789626/76‑1 TATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGA < 1:1062386/76‑1 TATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGA < 2:79610/76‑1 GTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATA > 1:688554/1‑76 TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1789767/1‑76 TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1355056/1‑76 TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:1402415/1‑76 TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:231341/1‑76 TTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAA > 1:431907/1‑76 TGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAG > 1:1047948/1‑76 GGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGT > 2:1860364/1‑76 TAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGA > 2:1136264/1‑76 AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGAT < 1:716908/76‑1 AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGAT < 1:1550254/76‑1 ACAATCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATAC < 1:1250920/76‑1 ACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATAC < 1:826267/76‑1 GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:934466/76‑1 GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:293657/76‑1 GATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGG < 2:1722482/76‑1 TTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGC > 1:1209251/1‑76 TTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGC > 2:355126/1‑76 TCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCA < 1:444128/76‑1 CAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAA > 1:157688/1‑76 CAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAA < 1:1804670/76‑1 GTTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACC < 2:404592/76‑1 TTAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCC < 2:1463458/76‑1 TAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCG > 2:1553003/1‑76 TAACGGCTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCG < 2:654219/76‑1 AACGGCTGAAGGACATCGGGTCAATCGCCGACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGC < 1:968768/76‑1 CTGAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCA > 1:435766/1‑76 GAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACA > 2:1290783/1‑76 GAAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACA < 1:486354/76‑1 AAGGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAG > 2:1439141/1‑76 GGACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCT < 2:1077118/76‑1 GACATCGGGTCAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTG > 1:579954/1‑76 CAATCGCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTG > 1:1805150/1‑76 GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:1353058/1‑76 GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:1666430/1‑76 GCCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > 2:724389/1‑76 CCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145751‑3145825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACC > REL606/3145833‑3145905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |