| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 3,145,826 | Δ7 bp | intergenic (+157/‑32) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3145825 | 1 (0.020) | 47 (0.820) | 33/146 | 0.6 | 97.9% | intergenic (+156/‑39) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor |
| ? | REL606 | 3145833 = | 1 (0.020) | intergenic (+164/‑31) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor | |||||
ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGT > REL606/3145758‑3145908 | cctcgtaattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgcca < 1:1713472‑M2/1‑1 (MQ=255) ctcgtaattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccaa > 1:1558450‑M2/75‑76 (MQ=255) tcgtaattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAAc < 1:1792157‑M2/3‑1 (MQ=255) cgtaattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAAcc > 2:482475‑M2/73‑76 (MQ=255) cgtaattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAAcc > 1:1365234‑M2/73‑76 (MQ=255) taattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTc > 2:979081‑M2/71‑76 (MQ=255) taattatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTc < 2:1625892‑M2/6‑1 (MQ=255) attatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCAt < 1:1176424‑M2/8‑1 (MQ=255) attatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCAt < 1:789626‑M2/8‑1 (MQ=255) tatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGa < 1:1062386‑M2/10‑1 (MQ=255) tatcgttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGa < 2:79610‑M2/10‑1 (MQ=255) gttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATa > 1:688554‑M2/63‑76 (MQ=255) ttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATaa > 1:1789767‑M2/62‑76 (MQ=255) ttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATaa > 1:1355056‑M2/62‑76 (MQ=255) ttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATaa > 1:1402415‑M2/62‑76 (MQ=255) ttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATaa > 1:431907‑M2/62‑76 (MQ=255) ttggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATaa > 1:231341‑M2/62‑76 (MQ=255) tggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAg > 1:1047948‑M2/61‑76 (MQ=255) ggcggtaaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAgt > 2:1860364‑M2/60‑76 (MQ=255) taaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGa > 2:1136264‑M2/55‑76 (MQ=255) aaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGAt < 1:1550254‑M2/23‑1 (MQ=255) aaacaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGAt < 1:716908‑M2/23‑1 (MQ=255) acaatcgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATAc < 1:1250920‑M2/25‑1 (MQ=255) acaaccgttggatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATAc < 1:826267‑M2/25‑1 (MQ=255) cAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTAt > 1:246586/1‑76 (MQ=255) gatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATgg < 2:293657‑M2/35‑1 (MQ=255) gatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATgg < 2:1722482‑M2/35‑1 (MQ=255) gatttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATgg < 2:934466‑M2/35‑1 (MQ=255) ttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGc > 2:355126‑M2/39‑76 (MQ=255) ttcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGc > 1:1209251‑M2/39‑76 (MQ=255) tcagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCa < 1:444128‑M2/39‑1 (MQ=255) cagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCaa < 1:1804670‑M2/40‑1 (MQ=255) cagcgttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCaa > 1:157688‑M2/37‑76 (MQ=255) gttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAAcc < 2:404592‑M2/44‑1 (MQ=255) ttaacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAAccc < 2:1463458‑M2/45‑1 (MQ=255) taacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCg < 2:654219‑M2/46‑1 (MQ=255) taacggctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCg > 2:1553003‑M2/31‑76 (MQ=255) aacggctgaaggacatcgggtcaatcgccGACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGc < 1:968768‑M2/47‑1 (MQ=255) ctgaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTca > 1:435766‑M2/25‑76 (MQ=255) gaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTcaca > 2:1290783‑M2/23‑76 (MQ=255) gaaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTcaca < 1:486354‑M2/54‑1 (MQ=255) aaggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAg > 2:1439141‑M2/22‑76 (MQ=255) ggacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCt < 2:1077118‑M2/57‑1 (MQ=255) gacatcgggtcaatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTg > 1:579954‑M2/19‑76 (MQ=255) caatcgccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTg > 1:1805150‑M2/9‑76 (MQ=255) gccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCAcc > 2:1666430‑M2/4‑76 (MQ=255) gccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCAcc > 2:1353058‑M2/4‑76 (MQ=255) gccAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCAcc > 2:724389‑M2/4‑76 (MQ=255) aaCCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGt < 1:1001828/76‑1 (MQ=255) | ATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGT > REL606/3145758‑3145908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |