| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4201708 | 82 (1.280) | 3 (0.050) | 3/136 | 7.9 | 3.9% | intergenic (‑290/+27) | arpA/iclR | regulator of acetyl CoA synthetase; ankyrin‑like regulatory protein; b4017_1/DNA‑binding transcriptional repressor |
| ? | REL606 | = 4201716 | 74 (1.280) | intergenic (‑298/+19) | arpA/iclR | regulator of acetyl CoA synthetase; ankyrin‑like regulatory protein; b4017_1/DNA‑binding transcriptional repressor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4201627‑4201708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagaGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAAC < REL606/4201716‑4201642 AGTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATG < 1:1110982/76‑1 GTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGG < 1:970439/76‑1 GTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGG < 1:990953/76‑1 GTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGG > 1:628125/1‑76 GTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGG < 1:619232/76‑1 GTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGC > 1:615654/1‑76 GTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGC > 1:102319/1‑76 TATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCA < 2:481421/76‑1 ATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAG < 1:502998/76‑1 ATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAG < 1:284127/76‑1 ATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAG > 1:70258/1‑76 ATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAG > 2:1652800/1‑76 TGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAGA > 2:1981080/1‑76 TGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAGA > 1:1789904/1‑76 TGCCACTCAGGTATGATGGGCAGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTT < 2:1874001/76‑1 CAGTTATGGTGGGCAGAGGCAATATTCTGCCCATCATACCTG < 1:720994/42‑1 CAGGTATGATGGGCAGAGGCAATATTCTGCCCATCATACCTG > 2:720994/1‑42 GCAGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAA > 2:1785134/1‑76 CAGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAAT < 1:920529/76‑1 CAGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAAT < 1:737621/76‑1 AGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATA > 1:62381/1‑76 AGAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATA > 1:583620/1‑76 GAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAA < 2:1009919/76‑1 GAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAA > 2:4421/1‑76 GAGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAA < 1:47086/76‑1 AGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAAC > 1:1101391/1‑76 AGTGTATGACATTAAGTTATTCTGGCGTCAATACGATTAACAGACACCCTTATTCTATTGCCACTCAGGTATGATGGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4201627‑4201708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagaGGCAATATTCTGCCCATCATACCTGAGTGGCAATAGAATAAGGGTGTCTGTTAATCGTATTGACGCCAGAATAAC < REL606/4201716‑4201642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |