New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2898279 = | 72 (1.150) | 4 (0.110) +ATGGGCACAATTCATTGCAGTTACGCTCTA |
4/90 | 5.1 | 8.2% | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold |
? | REL606 | 3569965 = | 78 (1.250) | intergenic (+135/+109) | pitA/yhiO | phosphate transporter, low‑affinity/universal stress protein UspB | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TACGCTTATCAGGCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2898298‑2898279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTAGGCCTGATAAGCGTA > REL606/3569965‑3569984 |||||||||||||||||||||||||||||| TACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCTGATAAGCGTA > 1:1504802/1‑70 TACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCTGATAAGCGTA < 2:1504802/70‑1 CAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCTG > 1:543610/1‑52 CAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCTG < 2:543610/52‑1 |||||||||||||||||||||||||||||| TACGCTTATCAGGCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2898298‑2898279 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTAGGCCTGATAAGCGTA > REL606/3569965‑3569984 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |