| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2898279 = | 72 (1.150) | 4 (0.110) +ATGGGCACAATTCATTGCAGTTACGCTCTA |
4/90 | 5.1 | 8.2% | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold |
| ? | REL606 | 3569965 = | 78 (1.250) | intergenic (+135/+109) | pitA/yhiO | phosphate transporter, low‑affinity/universal stress protein UspB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCC > REL606/3569890‑3570040 | ttGTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTa > 1:796272/1‑76 (MQ=255) tGTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTAt > 2:1250902/1‑76 (MQ=255) tGTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTAt < 1:703530/76‑1 (MQ=255) gTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATg > 2:1104091/1‑76 (MQ=255) ttCATGCCGGATGCGGCGT‑GGACGCCCTATTCCGCCTACAAAAACAAACAAAATTAAAAAATTGCAGAGAGTATGt > 2:977648/1‑76 (MQ=9) cATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAg > 2:98211/1‑76 (MQ=255) cATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAg > 2:1037915/1‑76 (MQ=255) aTGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAgg < 1:1481816/76‑1 (MQ=255) aTGCCGGATGCGGCGT‑GAACGCCTTATCCCGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAgg > 2:1605151/1‑76 (MQ=255) tGCCGGATGCGGCGTGGAACCCCTT‑TCCCGCCCACCAAAAAAAACAAAATCAAAAAAATTCAGAGATTATATAGGc > 2:1663768/1‑76 (MQ=255) gATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGAt < 1:1914848/76‑1 (MQ=255) aTGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATa < 1:1917349/76‑1 (MQ=255) tGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATaa < 1:648894/76‑1 (MQ=255) tGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATaa < 2:357010/76‑1 (MQ=255) tGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATaa < 2:774268/76‑1 (MQ=255) gcggcgT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAg > 2:236598/1‑76 (MQ=255) cgT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTa < 1:1589693/76‑1 (MQ=255) gT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAg > 1:1896328/1‑76 (MQ=255) t‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAgc > 1:1272094/1‑76 (MQ=255) t‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAgc < 1:897822/76‑1 (MQ=255) gAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAgcg > 1:1809193/1‑76 (MQ=255) aaCGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAgcgc > 2:726142/1‑76 (MQ=255) aaCGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAgcgc > 2:1543859/1‑76 (MQ=255) aaCGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATGGCAGAGATTATGTAGGCCTGATAAGCGTAgcgc < 2:1467832/76‑1 (MQ=255) cGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCAt > 2:1360341/1‑76 (MQ=255) cTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAg < 2:690991/76‑1 (MQ=255) tATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGc < 2:1053999/76‑1 (MQ=255) tATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGc < 2:305597/76‑1 (MQ=255) tATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:375281/1‑76 (MQ=255) aTCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:768746/1‑76 (MQ=255) tCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa < 2:814363/76‑1 (MQ=255) ccGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 2:1952723/1‑76 (MQ=255) cGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt < 2:304072/76‑1 (MQ=255) gCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTATGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:1837950/1‑76 (MQ=255) gCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt < 2:1012937/76‑1 (MQ=255) ccTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTg > 2:1140833/1‑76 (MQ=255) tACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCg > 2:1557888/1‑76 (MQ=255) aCAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGt > 2:1283836/1‑76 (MQ=255) aCAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGt > 2:1786086/1‑76 (MQ=255) aCAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGt > 1:96976/1‑76 (MQ=255) aCAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGt > 2:1136391/1‑76 (MQ=255) cAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGtt > 1:200208/1‑76 (MQ=255) aaaaaCATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGttt > 2:900458/1‑76 (MQ=255) aaaaaCATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGttt < 2:555344/76‑1 (MQ=255) aaaaCATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTg < 2:1801541/76‑1 (MQ=255) aaaaCATAAAAATAAAATAGATTGCAGAGATTATGTAGGCCTGATAGGCGTAGCGCATCAGGCAATTTTGCGTTTg < 2:811971/76‑1 (MQ=17) aCATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTaa > 2:1164236/1‑76 (MQ=255) cATACAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAAt < 2:47063/76‑1 (MQ=255) aTGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATc > 1:826118/1‑76 (MQ=255) tGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCa < 2:865079/76‑1 (MQ=255) tGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCa < 2:188742/76‑1 (MQ=255) tGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCa > 1:829484/1‑76 (MQ=255) gCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAg < 1:1370535/76‑1 (MQ=255) aaaTTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGtc > 2:373004/1‑76 (MQ=255) aaTTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGtct > 2:181046/1‑76 (MQ=255) aTTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGtctc > 1:756236/1‑76 (MQ=255) tCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGa > 2:1155045/1‑76 (MQ=255) cAATAGATGGCAGAGATTATGTGGGCTTGATAGGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAg < 2:1433250/76‑1 (MQ=18) aGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCggg > 2:1559355/1‑76 (MQ=255) aTTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCggcgg > 1:610841/1‑73 (MQ=255) aTTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTc < 2:223137/76‑1 (MQ=255) ttGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCa > 2:1909462/1‑76 (MQ=255) ttGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCa < 2:20778/76‑1 (MQ=255) ttGCAGAGATTATGTAGGCCGGATAGGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCa < 2:487933/76‑1 (MQ=255) tGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGa < 2:143792/67‑1 (MQ=255) tGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGa > 1:143792/1‑67 (MQ=255) cAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGtt > 2:1946399/1‑76 (MQ=255) cAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGGCAGtt > 2:703342/1‑76 (MQ=255) agagATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGttt < 1:1576424/76‑1 (MQ=255) agagATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCCGGGCAGttt > 2:698036/1‑76 (MQ=255) agaTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCCGTTTAc > 2:725146/1‑76 (MQ=255) gaTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGGCAGTTTTCt > 2:1493177/1‑76 (MQ=255) aTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTg < 2:538626/76‑1 (MQ=255) aTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTg > 2:482581/1‑76 (MQ=255) aTTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGGCAGTTTTCTg > 2:879855/1‑76 (MQ=255) aTTATGGAGGCTTGATAAGCGTAGCGCATCGGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTg < 1:214730/76‑1 (MQ=21) ttATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTgg > 2:369701/1‑76 (MQ=255) ttATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGGCAGTTTTCttg > 2:847632/1‑74 (MQ=18) aTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGcc > 2:71382/1‑76 (MQ=255) | TTGTTCATGCCGGATGCGGCGT‑GAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCC > REL606/3569890‑3570040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |