| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3571132 = | 2 (0.040) | 195 (3.420) | 97/146 | 0.0 | 99.0% | coding (333/435 nt) | uspA | universal stress global response regulator |
| ? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
Only 100 of 221 total aligned reads displayed.
ATCAGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3571206‑3571132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC < REL606/3652533‑3652457 TCAGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTG > 2:854604/1‑76 TCAGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTG > 2:1488585/1‑76 CAGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGT < 2:1577869/76‑1 AGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTA < 2:678680/76‑1 AGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTA < 2:1387411/76‑1 GCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTAC > 1:1779623/1‑76 GCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTAC < 2:1075664/76‑1 GCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTAC > 2:642301/1‑76 GCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTAC > 2:1381671/1‑76 CATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGGCATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACT < 2:6457/76‑1 CATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACT > 2:1755272/1‑76 CATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACT < 1:1543510/76‑1 CATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACT < 2:1424022/76‑1 CATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACT > 1:654046/1‑76 ATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTG < 1:1593007/76‑1 TATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGA > 2:550110/1‑76 TATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGA > 1:167544/1‑76 ATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGAC < 1:1246825/76‑1 CAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCa < 1:470679/76‑2 CAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCC > 1:1098430/1‑76 CAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCC < 2:1587415/76‑1 AACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCac < 2:205775/76‑3 AACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCC < 1:678566/76‑1 ACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCA > 1:1058177/1‑76 ACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCA < 2:1110264/76‑1 CGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCACAA < 2:1052422/76‑1 TGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCGGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCACAAAc > 1:1055555/1‑75 TGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAA < 1:1232085/76‑1 TGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAA < 2:1779971/76‑1 TGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAA > 1:1321204/1‑76 TGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCACAAAc < 2:1039508/76‑2 ACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGT < 1:214062/76‑1 GTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGG > 1:967830/1‑76 TTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACA < 1:944290/76‑1 TTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACA > 2:1497595/1‑76 TTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACA > 1:1754947/1‑76 ATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTT > 1:1177006/1‑76 CAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:813920/1‑76 CAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:851443/76‑1 GCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 2:57797/1‑76 GCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:92675/76‑1 GCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:604176/76‑1 CTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:173789/1‑76 CTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 2:560223/76‑1 TGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC > 1:1408396/1‑76 GACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTGCTGACCCCAAAAAGTTGGACAGTTAAACACG > 2:1863949/1‑76 GACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > 2:1618557/1‑76 GACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACG > 1:1630639/1‑76 ACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA < 1:74258/76‑1 CGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG < 2:1414588/76‑1 TGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC > 2:1462566/1‑76 GCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA < 1:503194/76‑1 GCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA < 2:345214/76‑1 GGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 2:438464/76‑1 GAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT < 1:1268267/76‑1 AAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 2:1779623/76‑1 AAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:264896/1‑76 AAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 2:500983/1‑76 GACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:360490/76‑1 ACATCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT < 1:571300/76‑1 TCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG < 1:522512/76‑1 TCAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTG < 2:1717548/76‑1 CAGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGA > 2:1679908/1‑76 AGTTTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGAT > 1:491274/1‑76 TTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC > 1:457336/1‑76 TTGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCC > 1:1513186/1‑76 TGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCG < 2:314910/76‑1 TGCTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCG > 1:42661/1‑76 CTCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGAT > 2:892514/1‑76 TCCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA < 1:964804/76‑1 CCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT < 1:319128/76‑1 CCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT < 1:1488585/76‑1 CCAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT > 1:1192254/1‑76 CAGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT > 1:400277/1‑76 AGAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTC < 1:1859512/76‑1 GAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA > 2:1307135/1‑76 GAAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCA < 1:377700/76‑1 AAGTCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAA < 1:1002501/76‑1 TCCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG < 2:827977/76‑1 CCTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG < 2:732623/76‑1 CTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 2:1847178/1‑76 CTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 1:1383567/1‑76 CTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA < 1:1446103/76‑1 CTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA > 2:1440261/1‑76 CTGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGA < 1:1688021/76‑1 TGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG > 1:1044247/1‑76 TGGTGGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG > 2:490384/1‑76 aacGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTC > 1:1876406/4‑76 cGTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG > 1:703198/2‑76 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGA > 2:393590/1‑76 GTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATT < 1:630447/62‑1 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGAC > 2:1551226/1‑76 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGAC > 2:713852/1‑76 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGAC > 2:1811842/1‑76 TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGAC > 1:690332/1‑76 GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 2:385596/1‑76 GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 1:610892/1‑76 GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 2:705381/1‑76 GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 2:1203055/1‑76 GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC > 2:1607190/1‑76 ATCAGCATATCAACGTGAACGGTGTTGATCAGCTGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3571206‑3571132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACC < REL606/3652533‑3652457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |