| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3571132 = | 2 (0.040) | 195 (3.420) | 97/146 | 0.0 | 99.0% | coding (333/435 nt) | uspA | universal stress global response regulator |
| ? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
Only 100 of 250 total aligned reads displayed.
CGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATT > REL606/3571057‑3571207 | tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacac > 2:393590‑M1/76‑76 (MQ=255) ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacg > 1:703198‑M1/75‑75 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacgtt < 2:1461222‑M1/4‑4 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacgtt > 1:1876406‑M1/73‑73 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaccac < 2:716369‑M1/4‑1 (MQ=255) gactccaatggaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacgtt > 1:1779540‑M1/73‑73 (MQ=255) cgacctgggccaagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCaccacc > 1:1142578‑M2/70‑76 (MQ=255) actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaccacc > 2:571623‑M1/72‑76 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaccacca < 2:1381827‑M1/6‑1 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAg > 1:1383567‑M1/70‑76 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAg < 1:1446103‑M1/7‑1 (MQ=255) tccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAg < 2:846388‑M1/7‑1 (MQ=255) acctgggccaagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAg < 1:43785‑M2/9‑1 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAgg < 2:732623‑M1/8‑1 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAgg < 2:1779653‑M1/8‑1 (MQ=255) ctgggccaagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGa > 1:1651649‑M2/66‑76 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGa < 2:1098430‑M1/9‑1 (MQ=255) tgggccaagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGAc < 2:1346584‑M2/12‑1 (MQ=255) gggccaagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACt < 2:1036295‑M2/13‑1 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACtt < 1:1002501‑M1/12‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTc < 1:377700‑M1/13‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacac > 2:630447‑M1/62‑62 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTg > 1:400277‑M1/62‑76 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTgg < 1:319128‑M1/16‑1 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTgg < 1:1488585‑M1/16‑1 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTgg > 1:1192254‑M1/61‑76 (MQ=255) aagttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTgg < 2:1625909‑M2/18‑1 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGa < 1:964804‑M1/17‑1 (MQ=255) agttctggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGa < 1:93334‑M2/19‑1 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCa > 1:42661‑M1/57‑76 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCa < 2:314910‑M1/20‑1 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCaa > 1:457336‑M1/56‑76 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCaa > 1:1513186‑M1/56‑76 (MQ=255) ggtcgatgcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAAc > 2:22497‑M2/52‑76 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACt > 1:1691104‑M1/53‑76 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACt > 1:491274‑M1/53‑76 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCTAACTg < 2:15132‑M1/25‑1 (MQ=255) cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGa < 2:1717548‑M1/26‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGAt < 2:492844‑M1/27‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAAatgatg < 1:1819821‑M1/28‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATg < 2:1771827‑M1/28‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGt < 1:571300‑M1/29‑1 (MQ=255) gcaatcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTc > 2:1244897‑M2/45‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCtt > 1:264896‑M1/45‑76 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCtt < 2:1415150‑M1/32‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTc < 1:1268267‑M1/33‑1 (MQ=255) tcaagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTcc < 1:298618‑M2/36‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTcc < 1:1662989‑M1/34‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTcc < 2:438464‑M1/34‑1 (MQ=255) caagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCg < 2:945667‑M2/37‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTtccn > 1:1685180‑M1/42‑75 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCg > 1:468285‑M1/42‑76 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc < 1:503194‑M1/36‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc < 2:345214‑M1/36‑1 (MQ=255) tgcctcgtgtttaactgtccaacttttgggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc > 2:1147058‑M1/41‑76 (MQ=255) aagaaatacgatatggatctggtggtttgtggtgagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc < 2:473189‑M2/38‑1 (MQ=255) aagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc > 1:940276‑M2/39‑76 (MQ=255) aagaaatacgatatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGc > 2:1355104‑M2/39‑76 (MQ=255) aTCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCAc > 1:529438/1‑76 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTc > 2:1618557‑M1/36‑76 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCa > 2:1851511‑M1/35‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGc < 1:604176‑M1/44‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTg < 1:1216677‑M1/46‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTg < 2:1479825‑M1/46‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTg < 1:851443‑M1/46‑1 (MQ=255) tatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGa > 1:1562972‑M2/28‑76 (MQ=255) tatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGa > 1:350490‑M2/28‑76 (MQ=255) tatggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGa > 2:1492320‑M2/28‑76 (MQ=255) atggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGAt < 2:1399018‑M2/50‑1 (MQ=255) ggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCa > 2:658463‑M2/25‑76 (MQ=255) ggatctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCa > 1:1028149‑M2/25‑76 (MQ=255) gtccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAac < 1:816255‑M1/52‑1 (MQ=255) atctggtggtttgtggtcagtaCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAac > 2:821261‑M2/23‑76 (MQ=255) ccaactttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAacac > 1:967830‑M1/23‑76 (MQ=255) actttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGt < 1:214062‑M1/57‑1 (MQ=255) ctttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGtt > 2:1823346‑M1/19‑76 (MQ=255) ttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCa > 1:1413216‑M1/17‑76 (MQ=255) ttttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCa > 1:1321204‑M1/17‑76 (MQ=255) gtttgtggtcagtacaCCACCAGGACTTCTGGAGCAAACCGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCa > 1:1055555‑M1/17‑76 (MQ=255) tttggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCAc < 1:753009‑M1/61‑1 (MQ=255) tggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGt < 2:87294‑M1/63‑1 (MQ=255) tggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGt > 1:1058177‑M1/14‑76 (MQ=255) gtggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGtt < 2:285544‑M1/64‑1 (MQ=255) ggggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGtt < 1:678566‑M1/64‑1 (MQ=255) gggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTg > 1:1098430‑M1/12‑76 (MQ=255) gggtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTg < 2:1587415‑M1/65‑1 (MQ=255) gtcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGat < 1:1246825‑M1/67‑1 (MQ=255) tcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGata < 1:625643‑M1/68‑1 (MQ=255) tcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGata > 2:550110‑M1/9‑76 (MQ=255) tcagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGata > 1:1743515‑M1/9‑76 (MQ=255) cagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGatat < 1:1799866‑M1/69‑1 (MQ=255) cagtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGatat < 1:1593007‑M1/69‑1 (MQ=255) agtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATg < 2:1424022‑M1/70‑1 (MQ=255) agtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATg > 1:654046‑M1/7‑76 (MQ=255) gtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGc > 2:642304‑M1/6‑76 (MQ=255) gtacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGc < 2:1075664‑M1/71‑1 (MQ=255) tacaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCt < 2:678680‑M1/72‑1 (MQ=255) acaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTg < 2:1040201‑M1/73‑1 (MQ=255) acaCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTg < 2:1577869‑M1/73‑1 (MQ=255) aCCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGAt > 2:1698440‑M1/2‑76 (MQ=255) | CGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATT > REL606/3571057‑3571207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |