| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 562246 = | 67 (1.140) | 3 (0.050) | 3/142 | 6.9 | 4.6% | coding (14/762 nt) | envY | DNA‑binding transcriptional activator of porin biosynthesis |
| ? | REL606 | 562484 = | 62 (1.120) | coding (849/891 nt) | ybcH | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAACGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGTGATC > REL606/562175‑562321 | tAAACGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTgctgct > 1:244942/1‑76 (MQ=255) aaCGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCa < 1:921468/76‑1 (MQ=255) aCGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCaa < 1:1702037/76‑1 (MQ=255) cGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAAt > 1:1767668/1‑76 (MQ=255) gTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAAtt < 2:746583/76‑1 (MQ=255) tAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTg > 1:1675395/1‑76 (MQ=255) aGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGc < 1:794485/76‑1 (MQ=255) gCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCa > 1:678096/1‑76 (MQ=255) gCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCa < 1:491239/76‑1 (MQ=255) ttATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGc < 2:1582672/76‑1 (MQ=255) ttATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGc > 1:1526749/1‑76 (MQ=255) tATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCa < 2:1218024/76‑1 (MQ=255) aTTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCAc > 2:636978/1‑76 (MQ=255) aTTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCAc < 2:41399/76‑1 (MQ=255) tGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCActc > 2:1826480/1‑76 (MQ=255) cTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAg > 1:308522/1‑76 (MQ=255) cTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAg < 1:755609/76‑1 (MQ=255) ttACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGa > 1:1557269/1‑76 (MQ=255) ttACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGa > 1:666077/1‑76 (MQ=255) tacctctacctcTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGat < 1:491042/76‑1 (MQ=255) acctctacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGata < 1:295526/76‑1 (MQ=255) ctctacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATc > 1:1568447/1‑76 (MQ=255) ntacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAg > 1:475814/2‑76 (MQ=255) ctacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAg > 1:711916/1‑76 (MQ=255) ctacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAg < 1:1187745/76‑1 (MQ=255) tacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGa < 1:1601886/76‑1 (MQ=255) tacctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGa > 1:897022/1‑76 (MQ=255) acctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGaa < 2:97884/76‑1 (MQ=255) acctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGaa < 1:919520/76‑1 (MQ=255) acctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGaa > 1:1212097/1‑76 (MQ=255) acctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGaa < 2:950744/76‑1 (MQ=255) cctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGaaa > 2:1298368/1‑76 (MQ=255) ctctTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAAc > 2:313359/1‑76 (MQ=255) ttttCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCg > 1:1607584/1‑76 (MQ=255) tttCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCgn < 1:644330/76‑2 (MQ=255) tttCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGc > 2:255790/1‑76 (MQ=255) cGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCa < 1:165677/76‑1 (MQ=255) cGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCa < 2:1189846/76‑1 (MQ=255) cGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCa > 1:1258028/1‑76 (MQ=255) ggTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCaa > 2:1615015/1‑76 (MQ=255) cAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAgg > 2:1552785/1‑76 (MQ=255) cAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAgg > 2:1033287/1‑76 (MQ=255) cAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAgg > 2:479188/1‑76 (MQ=255) aGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGa < 1:1048758/76‑1 (MQ=255) aGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGa > 1:1337543/1‑76 (MQ=255) ggATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGAt > 1:1272997/1‑76 (MQ=255) tCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTa < 2:719231/76‑1 (MQ=255) ccgcacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTAt < 1:266935/73‑1 (MQ=255) caccacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTAt < 2:1607584/76‑1 (MQ=255) caccacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTAt > 2:13017/1‑76 (MQ=255) caccacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTAt > 1:515407/1‑76 (MQ=255) accacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATg < 1:1486408/76‑1 (MQ=255) ccacGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGc > 2:8273/1‑76 (MQ=255) cGCAAGGTTTACTGCTGCTCTATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTc < 1:1772904/76‑1 (MQ=255) cAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCt > 2:269979/1‑76 (MQ=255) aaGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTg > 2:1455173/1‑76 (MQ=255) aaGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTg > 1:381891/1‑76 (MQ=255) aaGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTg > 2:1722608/1‑76 (MQ=255) aaGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTg > 1:1194823/1‑76 (MQ=255) aGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTgn < 1:1489840/76‑2 (MQ=255) ggTTTACTGCTGCTCAATTGCATTTCGCACTTCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCa < 1:1763786/76‑1 (MQ=255) gTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCAt < 1:1449577/76‑1 (MQ=255) tttACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATg > 1:1032440/1‑76 (MQ=255) tttACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATg < 1:133482/76‑1 (MQ=255) tttACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATg > 1:298080/1‑76 (MQ=255) aCTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGt > 1:654591/1‑76 (MQ=255) tgctgcTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGTGa > 1:300299/1‑76 (MQ=255) ctgctCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGTGATc > 2:1742900/1‑76 (MQ=255) ctgctCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGTGATc < 1:571112/76‑1 (MQ=255) | TAAACGTAGCATGGTTATTGACGCTTACCTCTACCTCTTTTTCGGTCAGGATCACCACGCAAGGTTTACTGCTGCTCAATTGCATTTCGCACTCCTCAGATATCAGAAACTCCGCTCAAAGGATCTATGCTTCCTGCATGAGTGATC > REL606/562175‑562321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |