| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 562246 = | 67 (1.140) | 3 (0.050) | 3/142 | 6.9 | 4.6% | coding (14/762 nt) | envY | DNA‑binding transcriptional activator of porin biosynthesis |
| ? | REL606 | 562484 = | 62 (1.120) | coding (849/891 nt) | ybcH | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCCGGTTTCG > REL606/562414‑562557 | ggTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGaa < 2:711916/76‑1 (MQ=255)ggTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGaa > 2:667149/1‑76 (MQ=255) gTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGaaa > 2:1135858/1‑76 (MQ=255) gTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGaaa < 2:1675395/76‑1 (MQ=255) cGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATa < 2:1779089/76‑1 (MQ=255) gTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATag < 2:26657/76‑1 (MQ=255) tACCCGTCTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga > 2:177510/1‑76 (MQ=255) tACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga > 2:1646114/1‑76 (MQ=255) tACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga < 1:1742900/76‑1 (MQ=255) tACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga < 2:475814/76‑1 (MQ=255) tACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga > 2:857109/1‑76 (MQ=255) tACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATaga > 2:1519176/1‑76 (MQ=255) ccccGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATagag < 1:479188/75‑1 (MQ=255) aCCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATagag > 2:1099410/1‑76 (MQ=255) ttACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCt < 1:1615015/76‑1 (MQ=255) ttACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCt < 1:69919/76‑1 (MQ=255) tACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCtt > 2:960688/1‑76 (MQ=255) tACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCtn < 1:1722608/76‑2 (MQ=255) aCCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCttt < 2:654591/76‑1 (MQ=255) ccTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCtttt < 2:298080/76‑2 (MQ=255) cTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTAc > 1:89971/1‑76 (MQ=255) tGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTAcc < 1:1733746/76‑1 (MQ=255) tGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTAcc > 1:165977/1‑76 (MQ=255) ggaggaGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCg < 2:374777/76‑1 (MQ=255) agaTTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAaga > 1:1724212/1‑76 (MQ=255) agaTTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAaga > 2:80737/1‑76 (MQ=255) agaTTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAaga < 2:1272997/76‑1 (MQ=255) gaTTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAagag > 1:1166456/1‑76 (MQ=255) tttAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGa < 2:529137/76‑1 (MQ=255) aaTACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACg < 1:1598458/76‑1 (MQ=255) aaTACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACg > 2:1547665/1‑76 (MQ=255) aTACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGt > 2:915471/1‑76 (MQ=255) aCTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGttt > 2:972464/1‑76 (MQ=255) cTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTc > 2:776536/1‑76 (MQ=255) cTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTc < 2:308522/76‑1 (MQ=255) cTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTc > 2:1607622/1‑76 (MQ=255) tCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCg < 1:343177/76‑1 (MQ=255) cGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGc > 2:678820/1‑76 (MQ=255) cGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGc > 2:1053564/1‑76 (MQ=255) gagaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCt < 1:1455173/76‑1 (MQ=255) agaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTa < 1:1033938/76‑1 (MQ=255) agaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTa < 1:1276009/76‑1 (MQ=255) agaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTa > 2:1371573/1‑76 (MQ=255) agaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTa < 1:609644/76‑1 (MQ=255) agaATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTa < 2:165576/76‑1 (MQ=255) gCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGc > 1:308247/1‑76 (MQ=255) gCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGc > 1:684434/1‑76 (MQ=255) ccGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCg < 1:1552785/76‑1 (MQ=255) cGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGa < 2:1568447/76‑1 (MQ=255) tGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAgg < 1:1162523/76‑1 (MQ=255) tGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAgg > 2:1214519/1‑76 (MQ=255) gtcgcgACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAgg < 2:515407/74‑1 (MQ=255) gcgcGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGc > 1:633471/1‑76 (MQ=255) gcgACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCaa > 1:1728373/1‑76 (MQ=255) cgACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAAt > 1:451135/1‑76 (MQ=255) aCGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAAttt < 1:1619023/76‑1 (MQ=255) gCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGc < 1:78329/76‑1 (MQ=255) cAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCg > 2:1367270/1‑76 (MQ=255) cAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCg > 2:122569/1‑76 (MQ=255) aaaTAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGCGGCAATTTCTGCGt > 1:90651/1‑76 (MQ=255) aaTAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTc > 2:1160350/1‑76 (MQ=255) cgcAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggtt > 1:645534/1‑76 (MQ=255) gcAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggttt < 1:13017/76‑1 (MQ=255) cAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggtttc < 1:1293535/76‑1 (MQ=255) cAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggtttc < 2:300299/76‑1 (MQ=255) agagagAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggtttcg > 1:162463/1‑76 (MQ=255) agagagAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCcggtttcg > 1:1192421/1‑76 (MQ=255) | GGTCGTACCCGACTTACCTGGAGGAGATTTAATACTCGAGAATGCCGTGCGCGACGGGCAAATAGCGCAGAGAGAAATAGAGAGTGTCTTTACCGCAAGAGGAACGTTTCGCTAACAGCGAGGCAATTTCTGCGTCCGGTTTCG > REL606/562414‑562557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |