| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 56 [0] | [1] 55 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 33 (0.940) | 27/104 | 0.2 | 98.5% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.030) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 | tAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT > 1:1121898‑M1/1‑76 (MQ=255)tAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT > 2:482371‑M1/1‑76 (MQ=255) aaCCCATAAAATNCTNGCTGTACCAGGAACCACCNCCTTAGACTGTGTAATCTCCCTTACACGGGCTTATTTTTTt < 1:1405879‑M1/76‑2 (MQ=255) aaCCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTt > 2:1445785‑M1/1‑75 (MQ=255) aTAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgca > 2:57541‑M1/1‑70 (MQ=255) aTAAAATGCTAGCTATACCTGGAACCACCGCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTATTtatgca < 2:23699‑M1/76‑7 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata < 2:1546117‑M1/76‑9 (MQ=255) aaggctaGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag < 1:1098273‑M1/73‑11 (MQ=255) aaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag < 1:1099290‑M1/76‑11 (MQ=255) aaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag < 1:919136‑M1/76‑11 (MQ=255) aaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag < 1:919121‑M1/76‑11 (MQ=255) aaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag > 1:847968‑M1/1‑66 (MQ=255) aTGCTAGCTGTTCCAGGAACCCCCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagc < 1:783482‑M1/76‑12 (MQ=255) gCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccc < 2:1256869‑M1/76‑14 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccct > 1:1300353‑M1/1‑62 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta > 1:635556‑M1/1‑61 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 2:228430‑M1/1‑60 (MQ=255) aGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctat > 2:930627‑M1/1‑60 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggta < 1:116427‑M1/76‑25 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctcgggta < 1:122179‑M1/76‑25 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa > 2:546679‑M1/1‑51 (MQ=255) gAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaacc < 1:742279‑M1/76‑28 (MQ=255) cctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccat < 2:1424554‑M1/76‑37 (MQ=255) tAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattga > 2:1469756‑M1/1‑37 (MQ=255) tAGCCTGNGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattga > 2:1378104‑M1/1‑37 (MQ=255) ccTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgacca > 1:799335‑M1/1‑34 (MQ=255) tgtgTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccaca < 2:714046‑M1/76‑45 (MQ=255) tgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatc < 2:499135‑M1/76‑47 (MQ=255) gtAATGTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttcctttgaccacatcg < 2:72604‑M1/76‑48 (MQ=255) gtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcg > 1:325935‑M1/1‑29 (MQ=255) tAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcga > 2:910249‑M1/1‑28 (MQ=255) aaTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgat > 1:807559‑M1/1‑27 (MQ=255) tctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatag > 1:123418‑M1/1‑25 (MQ=255) tctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatag < 2:1122522‑M1/76‑52 (MQ=255) ctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctgtggtaaccgtcttccattgactacatcgataga < 1:1566337‑M1/76‑53 (MQ=255) cccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaat > 1:784831‑M1/1‑22 (MQ=255) ccTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcaatagaatc < 1:1327976‑M1/76‑56 (MQ=255) ttACACGGGCTTATTTTTTtatgcataagccctatctctggtaactgtcttccattgaccacatcgatagaatcct > 1:888166‑M1/1‑19 (MQ=255) ttACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcct > 1:1239906‑M1/1‑19 (MQ=255) ttACACGGGCCTATTTTGTtatgcataagccctatctctggtaaccgtcttccattgaccagatcgatagaatcct > 1:139773‑M1/1‑19 (MQ=255) tACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctc < 2:436119‑M1/76‑59 (MQ=255) tACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctc > 1:1389495‑M1/1‑18 (MQ=255) tACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctc > 1:803611‑M1/1‑18 (MQ=255) cGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttc > 2:1060859‑M1/1‑14 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttca > 2:959904‑M1/1‑13 (MQ=255) gCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcata < 1:641077‑M1/76‑66 (MQ=255) gCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcata < 1:45477‑M1/76‑66 (MQ=255) cgtatTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaattctccttcatag < 1:41667‑M1/74‑67 (MQ=255) tttttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacg > 2:99383‑M1/1‑6 (MQ=255) tttttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatag > 2:1432624‑M1/1‑6 (MQ=255) tttttttatgcataagcccgatctctggtaaccgtcttccattgaccacatcgatag < 1:1432626‑M1/57‑52 (MQ=255) ttttttatgcanaanccctatctctgataaccgtcttccattgaccacatcgatagaaccctccttcattgcacga < 2:272501‑M1/76‑72 (MQ=255) ttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatg > 2:631475‑M1/1‑3 (MQ=255) ttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatg > 2:1660747‑M1/1‑3 (MQ=255) ttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatg < 2:936178‑M1/76‑74 (MQ=255) tttatgcataagccctatctctggtaatcgtgttncattgacnacntcnatagaatcatccttcatagcacgatgc > 1:1481369‑M1/1‑2 (MQ=255) | TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |