| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3523362 = | 105 (1.690) | 6 (0.110) | 4/134 | 6.6 | 6.3% | intergenic (‑361/+36) | ugpB/livF | glycerol‑3‑phosphate transporter subunit/leucine/isoleucine/valine transporter subunit |
| ? | REL606 | 3523382 = | 86 (1.550) | intergenic (‑381/+16) | ugpB/livF | glycerol‑3‑phosphate transporter subunit/leucine/isoleucine/valine transporter subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTGCTGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3523443‑3523362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccttATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCCGGTAT > REL606/3523382‑3523456 GCTGCTGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGA > 1:1622176/1‑76 TGCTGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACT > 2:1355074/1‑76 CTGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCC < 2:802878/76‑1 TGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCT < 2:66073/76‑1 TGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCT > 2:51660/1‑76 TGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCT < 1:996052/76‑1 TGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCT > 2:1931514/1‑76 GGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT < 2:994279/76‑1 GGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT < 1:754586/76‑1 GGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT < 2:225285/76‑1 GGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT < 2:1426749/76‑1 TAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTTATCAATCAACGTGTTATTA < 2:1409063/58‑1 TAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTTATCAATCAACGTGTTATTA > 2:742626/1‑58 TAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTTATCAATCAACGTGTTATTA > 1:1409063/1‑58 TAATAACACGTGGATTGATAAGGAGTCAAAAGACTCTTTATCAATCAACGTGTTATTA < 1:742626/58‑1 AACACGTTGATTGATAAGGAGTCAAAAGACTCCTTATCAATCAACGTGTT < 2:144906/50‑1 AACACGTTGATTGATAAGGAGTCAAAAGACTCCTTATCAATCAACGTGTT > 1:144906/1‑50 CTCCTTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCC > 2:1617310/1‑76 TTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCCGGTA > 1:1090483/1‑76 TATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCCGGTAT > 1:1677522/1‑76 TATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCCGGTAT > 1:1499731/1‑76 GCTGCTGGCGAACGAAGCAGTGAGAAGTGCGTATTTAGGCGGGTAATAACACGTTGATTGATAAGGAGTCAAAAGACTCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3523443‑3523362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccttATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACTGCTTCGTTCGCCAGCAGCGCGTCGCCGGTAT > REL606/3523382‑3523456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |