| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 60 (1.020) | 7 (0.130) | 6/136 | 5.8 | 10.7% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 62 (1.170) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040981‑2041128 | ttGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatt > 1:1774852/1‑76 (MQ=255)ttGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatt < 1:1457799/76‑1 (MQ=255) tGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatta < 2:1488365/76‑1 (MQ=255) tGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatta < 1:52907/76‑1 (MQ=255) gAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtattat > 1:1105263/1‑76 (MQ=255) aGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATtata < 1:626269/76‑1 (MQ=255) aGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATtata < 1:626267/76‑1 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc > 1:115200/1‑76 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc > 1:115214/1‑76 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc < 1:1205400/76‑1 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc < 1:1559396/76‑1 (MQ=255) aataaTGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc > 2:430483/4‑76 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat > 1:1114220/1‑76 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat > 1:17634/1‑76 (MQ=255) tGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcatcat < 1:350838/76‑1 (MQ=255) ggACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtt < 1:236812/76‑1 (MQ=255) ggACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtt > 1:320362/1‑76 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:1200687/76‑1 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:796948/76‑1 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:1200669/76‑1 (MQ=255) aCAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:1077866/76‑1 (MQ=255) aCAGGTAAAATTGCCGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAtttt < 1:796937/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:144780/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:144761/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:794622/76‑1 (MQ=255) cAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTc < 1:794606/76‑1 (MQ=255) gTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAat < 1:585206/76‑1 (MQ=255) gTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCA‑TTTCAata < 1:1508625/76‑1 (MQ=255) gTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCA‑TTTCAata < 1:1508613/76‑1 (MQ=255) tAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAata < 2:496429/76‑1 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat > 1:899125/1‑76 (MQ=255) gCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaacaa < 2:191403/76‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACaaa < 1:1443219/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:212115/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa > 1:349793/1‑76 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:310693/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:310679/76‑1 (MQ=255) tttttGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAgg < 1:3008/76‑1 (MQ=255) tGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTa < 1:973241/76‑1 (MQ=255) ggTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTaa > 1:140461/1‑76 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt > 1:676734/1‑76 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt > 2:1173241/1‑76 (MQ=255) gTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa > 2:1469932/1‑76 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa < 2:349960/76‑1 (MQ=255) tacTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 2:947144/3‑76 (MQ=255) tCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa > 1:1523118/1‑76 (MQ=255) acTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa > 2:514345/2‑76 (MQ=255) cTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAAt > 2:788098/1‑76 (MQ=255) aTTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg < 2:1594049/76‑1 (MQ=255) aTTTTTCTGTAATCAATATTACATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAg > 1:337914/1‑76 (MQ=255) tttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAt < 2:1850978/76‑1 (MQ=255) ttCTGTAATCGATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtg > 2:69511/1‑76 (MQ=255) tCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgt > 2:843943/1‑76 (MQ=255) tGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGa < 2:1077620/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt < 1:1627866/76‑1 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt > 2:622585/1‑76 (MQ=255) aTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGtt > 2:622594/1‑76 (MQ=255) cAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc > 1:1299017/1‑76 (MQ=255) atatTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaa < 1:1764338/76‑1 (MQ=255) tattatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaac > 2:677196/1‑76 (MQ=255) | TTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040981‑2041128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |