| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 38 (0.660) | 7 (0.140) | 5/134 | 6.1 | 12.7% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 62 (1.210) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039934‑2039854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTAT > REL606/2040304‑2040375 GAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTT > 1:1307854/1‑76GAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTT > 1:1307858/1‑76 ATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTAT > 2:572528/1‑76 ATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTT > 2:152814/1‑76 TTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCAT < 2:1237529/76‑1 AAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTG < 2:1611094/76‑1 GTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATA < 2:200945/76‑1 TTATCATAGGTTGCGGAAGGATTGTTCTTCCGGATTTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATAT < 2:1644174/76‑1 TTAGCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATAT < 2:1644178/76‑1 TATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATT < 2:1248117/76‑1 TATCATAGATTGCGGAAGTATTGTTCTACCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATT < 2:1248143/76‑1 TTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGC > 1:339120/1‑76 tgTTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCT > 1:1332469/3‑76 TATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCT > 1:1332455/1‑76 TTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTAT > 1:1449946/1‑76 GAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039934‑2039854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTAT > REL606/2040304‑2040375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |