| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 38 (0.660) | 7 (0.140) | 5/134 | 6.1 | 12.7% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 62 (1.210) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATG > REL606/2039781‑2039927 | aCCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaa < 2:894853/76‑1 (MQ=255) ccTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaaa < 1:1348809/76‑1 (MQ=255) ccTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaaa > 2:873256/1‑76 (MQ=255) ccTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaaa > 2:41205/1‑76 (MQ=255) aCATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATaa > 2:1444508/1‑76 (MQ=255) tttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACAt < 2:1493600/76‑1 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 1:494584/76‑1 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 1:504580/76‑1 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 1:854605/76‑1 (MQ=255) aaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAAc < 2:965073/76‑1 (MQ=255) aaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAAc > 1:910770/1‑76 (MQ=255) aGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACa < 1:177267/76‑1 (MQ=255) aGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACa < 1:967220/76‑1 (MQ=255) gCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACaa < 1:986857/76‑1 (MQ=255) caATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTc > 1:1126172/1‑76 (MQ=255) ccTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCa < 1:389103/76‑1 (MQ=255) atctGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAAcc > 2:160413/4‑76 (MQ=255) gACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATg > 1:236194/1‑76 (MQ=255) cTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGAt < 2:1325418/76‑1 (MQ=255) aCAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATaa < 2:1650769/76‑1 (MQ=255) gagCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGttt < 2:1465801/76‑1 (MQ=255) tCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCt < 1:1089172/76‑1 (MQ=255) tCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCt > 2:857739/1‑76 (MQ=255) tgttGCTGCACCCTCATGTAAAATAACATCCGGAAGACCAAAACTCCCGCAACTTAGAATAACATTTTTGCCtata > 2:1240031/3‑76 (MQ=255) tgttGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCtata > 2:1240044/3‑76 (MQ=255) tgctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAAt < 2:85641/76‑1 (MQ=255) tgctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAAt < 2:531956/76‑1 (MQ=255) ctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATAc < 2:653803/76‑1 (MQ=255) gcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAg > 2:1560222/1‑76 (MQ=255) gcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAg > 2:1560215/1‑76 (MQ=255) aCCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTa > 1:1379716/1‑76 (MQ=255) cccTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTAc < 1:726192/76‑1 (MQ=255) cTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCg < 1:635080/76‑1 (MQ=255) cTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCg > 1:1572328/1‑76 (MQ=255) cATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCt > 1:1726379/1‑76 (MQ=255) cATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCt > 2:797190/1‑76 (MQ=255) tGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTAt > 1:696371/1‑76 (MQ=255) gTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATg > 1:886531/1‑76 (MQ=255) | ACCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATG > REL606/2039781‑2039927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |