| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 281778 = | 71 (1.090) | 5 (0.090) | 4/134 | 7.5 | 6.9% | intergenic (‑261/‑514) | ykgK/ykgL | predicted regulator/hypothetical protein |
| ? | REL606 | 281954 = | 72 (1.240) | intergenic (‑437/‑338) | ykgK/ykgL | predicted regulator/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/281857‑281778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccaatCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAA > REL606/281954‑282026 TAAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGC > 2:1675434/1‑76 AAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCC < 2:34625/76‑1 AAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCC < 2:1892129/76‑1 AAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCC < 1:3996/76‑1 AGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCA < 1:141810/76‑1 AGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCA > 1:469331/1‑76 AGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTACCA < 1:141819/76‑1 ACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAAT < 1:1402079/76‑1 ACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAAT < 2:13097/76‑1 ACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAAT < 1:1237430/76‑1 CTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAATCAGTAAG < 2:133959/76‑1 CTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAATCAGTAAG < 2:1753248/76‑1 CACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAATCAGTAAGATAT < 2:589213/76‑1 CAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAATCAGTAAGATATTTTAA < 2:618493/76‑1 AGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAATCAGTAAGATATTTTAAT < 2:1611090/76‑1 TTGCCAATCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAAT > 2:870071/1‑76 TGCCAATCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATG > 1:1893059/1‑76 TGCCAATCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATG > 2:780849/1‑76 CCAATCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGA < 2:1762615/76‑1 AATCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAA > 2:678893/1‑76 TAAGACTATTCCTAACACTTCAGGGCAAAGTTCCTGACCAATATAAAATGCAAGTAAGAATTGAACGTTATATTGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/281857‑281778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccaatCAGTAAGATATTTTAATGGATTAACATGCCGCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAA > REL606/281954‑282026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |