New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041682 =	41 (0.630)	3 (0.050)	3/128	7.8	6.3%	coding (1139/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2041834 =	55 (1.000)					coding (987/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2041765‑2041682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT  >  REL606/2041834‑2041902                                                                                                                                                           TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                               <  1:462404/76‑1  CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                              >  2:1804536/1‑76   TTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAA                                                                             <  1:2082646/76‑1     TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                           <  1:483335/76‑1      TTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGC                                                                          <  1:179532/76‑1                     TACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAA                                                           <  2:990832/76‑1                           AAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAAT                                                     <  2:1575861/76‑1                             AAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATAT                                                   <  2:1298099/76‑1                                                                              ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT  >  2:562903/1‑76                                                                                                                                                           TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2041765‑2041682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT  >  REL606/2041834‑2041902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.