| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 41 (0.630) | 3 (0.050) | 3/128 | 7.8 | 6.3% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 55 (1.000) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACG > REL606/2041608‑2041755 | tCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCAt < 2:659551/76‑1 (MQ=255) cGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCAtt > 1:1230890/1‑76 (MQ=255) gTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACAAATAACAATTg > 1:1809266/1‑76 (MQ=255) ttGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGc < 1:954915/76‑1 (MQ=255) tGATACTTTCTGGCTAAATAATCCATTTAAAAACCATGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCa > 1:2010086/1‑76 (MQ=255) tttCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttata > 1:1891574/1‑76 (MQ=255) tttCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttata > 1:1891563/1‑76 (MQ=255) aataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCa > 1:1474110/1‑76 (MQ=255) ataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCAt > 1:952415/1‑76 (MQ=255) aatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCg < 1:166738/76‑1 (MQ=255) atCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGt > 1:1379980/1‑76 (MQ=255) aTTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATg > 1:1793065/1‑76 (MQ=255) tAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACa < 2:989674/76‑1 (MQ=255) aaaaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAg > 2:1679944/1‑76 (MQ=255) aCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaat < 1:748874/76‑1 (MQ=255) aCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaat < 1:748899/76‑1 (MQ=255) ccACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaata > 2:1432164/1‑76 (MQ=255) cGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAAtt < 2:1933037/76‑1 (MQ=255) gAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTg > 1:1299294/1‑76 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc > 2:1937377/1‑76 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca < 2:498178/76‑1 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca < 2:498181/76‑1 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca < 1:2000940/76‑1 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca > 2:896094/1‑76 (MQ=255) atGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCaa > 2:416657/1‑76 (MQ=255) atGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCaa > 1:1909864/1‑76 (MQ=255) aGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGt < 2:1737793/76‑1 (MQ=255) tAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCttt < 2:1745283/76‑1 (MQ=255) aaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttttt > 1:1048080/1‑76 (MQ=255) aaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttttt > 1:284558/1‑76 (MQ=255) cTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAg < 1:843561/76‑1 (MQ=255) ccAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTTATCAATGTCTTTTTTAGTAttt > 1:1907495/1‑76 (MQ=255) ccAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAttt > 1:1698213/1‑76 (MQ=255) ccAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAttt > 1:1907518/1‑76 (MQ=255) aaTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTcc > 1:905234/1‑76 (MQ=255) aaTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTcc > 1:502144/1‑76 (MQ=255) cACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaaa > 1:1357351/1‑76 (MQ=255) cACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaaa > 2:437581/1‑76 (MQ=255) aCCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAAc < 1:1532084/76‑1 (MQ=255) aCCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAAc < 1:1532094/76‑1 (MQ=255) ccATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACg > 1:1362651/1‑76 (MQ=255) | TCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACG > REL606/2041608‑2041755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |