| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 297897 | 125 (1.930) | 7 (0.120) | 4/136 | 7.5 | 6.2% | coding (117/669 nt) | ykgH | predicted inner membrane protein |
| ? | REL606 | = 298061 | 100 (1.700) | intergenic (‑48/+165) | ykgH/betA | predicted inner membrane protein/choline dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 127 total aligned reads displayed.
AACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAA > REL606/297822‑297972 | aaCAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGa < 2:971535/76‑1 (MQ=255)aaCAAGGATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGa > 2:1728951/1‑76 (MQ=255) aCAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGaa < 2:1083328/76‑1 (MQ=255) aCAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGaa < 1:268728/76‑1 (MQ=255) aGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaaca < 1:74570/76‑1 (MQ=255) aGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaaca < 1:850322/76‑1 (MQ=255) gTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaa < 1:2034765/76‑1 (MQ=255) tataCCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAaacaac < 1:453724/76‑1 (MQ=255) taCCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAg < 1:871189/76‑1 (MQ=255) taCCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAg > 1:1460741/1‑76 (MQ=255) taCCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAg > 1:1460731/1‑76 (MQ=255) aCCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGc > 1:223156/1‑76 (MQ=255) ccTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCa < 1:1540625/76‑1 (MQ=255) cTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCAc < 1:872220/76‑1 (MQ=255) tGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCAcc > 2:828007/1‑76 (MQ=255) gCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCAt < 1:100344/76‑1 (MQ=255) gCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCAt > 2:345938/1‑76 (MQ=255) gCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCAt > 2:345932/1‑76 (MQ=255) cGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATa < 1:1356455/76‑1 (MQ=255) cGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATa < 1:1356454/76‑1 (MQ=255) cGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATa < 2:173363/76‑1 (MQ=255) gTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAg < 2:95875/76‑1 (MQ=255) gTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAg > 1:1024864/1‑76 (MQ=255) gTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAg > 2:231957/1‑76 (MQ=255) ttGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGc < 1:1035303/76‑1 (MQ=255) ttGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGc > 1:1012510/1‑76 (MQ=255) ttGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGc < 2:597520/76‑1 (MQ=255) tGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGcc > 1:1506647/1‑76 (MQ=255) tGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGcc > 2:68252/1‑76 (MQ=255) tGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGcc < 2:572557/76‑1 (MQ=255) gTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCca > 2:961580/1‑76 (MQ=255) tCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcat < 1:191223/76‑1 (MQ=255) tCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcat < 1:324713/76‑1 (MQ=255) cTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcata > 1:451755/1‑76 (MQ=255) cTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcata < 1:332832/76‑1 (MQ=255) ggTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcataca > 2:387186/1‑76 (MQ=255) gTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcatacat > 2:1349312/1‑76 (MQ=255) gTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcatacat < 2:1066824/76‑1 (MQ=255) tttATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcatacata < 1:262205/76‑1 (MQ=255) tttATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCcatacata < 1:447277/76‑1 (MQ=255) ttATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATGCatat < 2:578013/76‑1 (MQ=255) ttATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACatat > 1:1805851/1‑76 (MQ=255) agttttAGGATGTAAATCTCTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAg < 2:1651108/74‑1 (MQ=255) aTTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAg < 2:1663035/76‑1 (MQ=255) aTTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAg > 2:1121819/1‑76 (MQ=255) ttttAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGcc < 1:2023348/76‑1 (MQ=255) ttAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCat < 2:1973882/76‑1 (MQ=255) ttAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCat < 2:1759001/76‑1 (MQ=255) tAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCata > 1:751901/1‑76 (MQ=255) aGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCataa > 1:606248/1‑76 (MQ=255) aGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCataa < 2:1326497/76‑1 (MQ=255) aGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCataa < 1:1339292/76‑1 (MQ=255) ggCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCataat < 1:1305601/76‑1 (MQ=255) cTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa > 1:310109/1‑76 (MQ=255) cTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa > 2:1609247/1‑76 (MQ=255) cTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCAtaataa > 1:1871970/1‑76 (MQ=255) gTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaaa > 1:552605/1‑76 (MQ=255) tAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaaaa > 1:606956/1‑76 (MQ=255) tAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATaaaaa < 1:2021041/76‑1 (MQ=255) aaTCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAgg > 2:1374055/1‑76 (MQ=255) tCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAACAGGAt > 1:1667028/1‑76 (MQ=255) tCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGAt > 2:1065502/1‑76 (MQ=255) cACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATa > 2:1890336/1‑76 (MQ=255) aCTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATaa < 1:808059/76‑1 (MQ=255) tttATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAacac > 1:55442/1‑76 (MQ=255) ttATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACg > 2:1451147/1‑76 (MQ=255) tataTTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGa > 2:639310/1‑76 (MQ=255) tataTTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGa < 2:251555/76‑1 (MQ=255) tataTTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGa > 1:1046679/1‑76 (MQ=255) tataTTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGa > 1:1455630/1‑76 (MQ=255) atatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACCTATAGCCATAATAAAAAGGATAACACGaa > 1:946695/1‑76 (MQ=255) atatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGaa < 1:1894268/76‑1 (MQ=255) atatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGaa < 1:1894285/76‑1 (MQ=255) atatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGaa > 1:946713/1‑76 (MQ=255) atatTGTCTTTATTGATATACAGAAACAACAGCACCACAGCCATACATATAGCCATAATAAAAAGGATAACACGaa < 1:923904/76‑1 (MQ=255) tatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAAt < 2:554011/76‑1 (MQ=255) tatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAAt > 1:1784019/1‑76 (MQ=255) tatTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAAt > 1:491056/1‑76 (MQ=255) atTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATc < 1:1739246/76‑1 (MQ=255) atTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATc < 1:336684/76‑1 (MQ=255) ttGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCt < 2:448019/76‑1 (MQ=255) ttATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttct > 1:1948080/1‑76 (MQ=255) ttATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttct > 2:1144296/1‑76 (MQ=255) tATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttctt < 2:1364791/76‑1 (MQ=255) tATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTttctt > 2:1489075/1‑76 (MQ=255) tGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAg < 1:731717/76‑1 (MQ=255) atatACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGat < 2:477936/76‑1 (MQ=255) tataCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGata < 1:1747412/76‑1 (MQ=255) ataCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataa < 1:1167943/76‑1 (MQ=255) ataCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataa > 1:1570452/1‑76 (MQ=255) ataCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataa < 1:1859358/76‑1 (MQ=255) ataCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataa < 1:1859379/76‑1 (MQ=255) taCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaa < 2:1666986/76‑1 (MQ=255) aCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaa < 2:1864953/76‑1 (MQ=255) aCAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaa > 2:1980595/1‑76 (MQ=255) aCAAAAACAACAGCCCCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaa < 1:1150875/76‑1 (MQ=255) cAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaat < 1:1941856/76‑1 (MQ=255) aGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaata > 1:992564/1‑76 (MQ=255) aGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaata > 1:1383072/1‑76 (MQ=255) aaaCAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGataaaataaa > 2:957454/1‑76 (MQ=255) | AACAAGTATACCTGGCGTTGTCTGGTTTATTTTTAGGCTGTAAATCACTTTTATATTGTCTTTATTGATATACAGAAACAACAGCACCATAGCCATACATATAGCCATAATAAAAAGGATAACACGAATCTTTTTCTTCAGATAAAATAAA > REL606/297822‑297972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |