| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2042256 = | 69 (1.060) | 5 (0.080) | 4/140 | 7.7 | 6.7% | coding (565/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042511 = | 76 (1.260) | coding (310/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGC > REL606/2042183‑2042331 | ttACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAatat > 1:1329493/1‑76 (MQ=255) aCTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTc > 1:1120165/1‑76 (MQ=255) aCTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTc > 1:1842954/1‑76 (MQ=255) tGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAg < 2:1604072/76‑1 (MQ=255) cTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATAGCATGGATTATAAATATTCAGta > 2:1671414/1‑76 (MQ=255) cTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGta > 2:1671428/1‑76 (MQ=255) tAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtac > 1:609574/1‑76 (MQ=255) aaaTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtaca < 1:2006263/76‑1 (MQ=255) aTGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaat > 1:151813/1‑76 (MQ=255) tGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaata < 1:2080277/76‑1 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca < 1:1057531/76‑1 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca < 1:1057547/76‑1 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca > 2:102928/1‑76 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca < 1:1544513/76‑1 (MQ=255) aaaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaataca < 1:1544512/76‑1 (MQ=255) aaaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGtacaatacaa < 1:583161/76‑1 (MQ=255) aaTAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTacaatacaat < 1:558895/76‑1 (MQ=255) tAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAttt < 1:1568694/76‑1 (MQ=255) tAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAAttt < 1:1568705/76‑1 (MQ=255) aGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATCATAAATATTCAGTACAATACAATTTa > 1:1187775/1‑76 (MQ=255) gCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTAt > 1:1057001/1‑76 (MQ=255) gCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTAt > 1:1056998/1‑76 (MQ=255) tttttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGa > 1:241773/1‑76 (MQ=255) tttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGaca > 1:1225139/1‑76 (MQ=255) ttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGacac > 2:949627/1‑76 (MQ=255) ttGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGacac > 1:753537/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:686885/1‑76 (MQ=255) tGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACt > 1:739251/1‑76 (MQ=255) aTGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACtata < 1:1681820/76‑1 (MQ=255) tGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAg > 1:1362839/1‑76 (MQ=255) gTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAgn < 1:768260/76‑2 (MQ=255) tttCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGa > 1:535541/1‑76 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa < 2:1804434/76‑1 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa < 2:1804432/76‑1 (MQ=255) cATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATaa < 1:1498395/76‑1 (MQ=255) tAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACg > 1:790156/1‑76 (MQ=255) cAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGAtt < 1:2020541/76‑1 (MQ=255) aaaaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTg < 2:1446750/76‑1 (MQ=255) aaaaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTg > 2:762531/1‑76 (MQ=255) aaaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTgg > 1:592572/1‑76 (MQ=255) aaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGa > 1:1221867/1‑76 (MQ=255) aaTTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGa < 1:1093860/76‑1 (MQ=255) ttCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaaaa > 2:2061747/1‑76 (MQ=255) ttCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGaaaa > 1:1125657/1‑76 (MQ=255) tctcTTTTGGATACCATGGATTATAAATATTAAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAc > 2:1405097/1‑76 (MQ=255) tctcTTTTGGATACCATGGATTATAAATATTAAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAAc > 2:1405078/1‑76 (MQ=255) ttttGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACTCTATAGGATAACGATTGGAAAACCAAt < 2:306241/76‑1 (MQ=255) ttGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGt > 1:419443/1‑76 (MQ=255) ggATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTcc > 1:1636197/1‑76 (MQ=255) ggATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTcc > 2:587248/1‑76 (MQ=255) ggATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTcc < 1:1099182/76‑1 (MQ=255) aTACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCAt > 2:1397782/1‑76 (MQ=255) gaCCCTGGATTATAAATATTCAGTACAATACAATGTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATa < 2:430690/75‑1 (MQ=255) aCCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATAc > 1:539414/1‑76 (MQ=255) ccATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACt > 1:7478/1‑76 (MQ=255) aTGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTcc < 2:151813/76‑1 (MQ=255) aTGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTcc < 1:80349/76‑1 (MQ=255) aTGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTcc < 1:80347/76‑1 (MQ=255) ggATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCAt > 2:1975590/1‑76 (MQ=255) gATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATa < 2:1130980/76‑1 (MQ=255) tataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAcc < 1:1619683/76‑1 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc > 2:1799635/1‑76 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc > 1:1418856/1‑76 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc > 1:2071673/1‑76 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc > 1:1561872/1‑76 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc < 1:1734504/76‑1 (MQ=255) ataAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAAccc > 2:825894/1‑76 (MQ=255) atatTCAGTACAATACCATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAag > 2:1091965/1‑76 (MQ=255) atatTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAag < 1:396687/76‑1 (MQ=255) tatTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAagc > 2:1074988/1‑76 (MQ=255) | TTACTGCTAAATGAAAATAGCTTTTTGAATGTTTCATAGCAAAATTTCTCTTTTGGATACCATGGATTATAAATATTCAGTACAATACAATTTATGACACTATAGGATAACGATTGGAAAACCAATGTCCATACTCCATAACCCAAAGC > REL606/2042183‑2042331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |