| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2042256 = | 69 (1.060) | 5 (0.080) | 4/140 | 7.7 | 6.7% | coding (565/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042511 = | 76 (1.260) | coding (310/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATA > REL606/2042436‑2042582 | aaGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATaa < 2:1875809/76‑1 (MQ=255)aaGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATaa < 1:587248/76‑1 (MQ=255)aaGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATaa < 2:1013808/76‑1 (MQ=255) aGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATaaa < 2:535541/76‑1 (MQ=255) gTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCGAGCAGAGGTATTTGATAGAATAAAg > 1:1401411/1‑76 (MQ=255) gTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCGAGCAGAGGTATTTGATAGAATAAAg > 1:1401403/1‑76 (MQ=255) gTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAg < 1:245072/76‑1 (MQ=255) gTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAg > 1:1401420/1‑76 (MQ=255) gTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAg < 2:539414/76‑1 (MQ=255) ttAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGc > 2:1015203/1‑76 (MQ=255) ttAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGc < 2:1561872/76‑1 (MQ=255) ccATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATGAAGCAatat > 1:1054834/1‑76 (MQ=255) ccATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAatat > 1:1612367/1‑76 (MQ=255) cATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAAtata < 2:1329493/76‑1 (MQ=255) cATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAAtata < 2:806311/76‑1 (MQ=255) tttGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaag < 1:102928/76‑1 (MQ=255) ttGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaaga < 1:1397782/76‑1 (MQ=255) tGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaagaa > 1:536821/1‑76 (MQ=255) tGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaagaa > 1:536793/1‑76 (MQ=255) tGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaagaa > 1:250044/1‑76 (MQ=255) tGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaagaa > 1:536797/1‑76 (MQ=255) gCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATaagaag < 2:1636197/76‑1 (MQ=255) cTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAagaaga > 1:110758/1‑76 (MQ=255) cTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAagaaga > 1:77202/1‑76 (MQ=255) tataACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGAt < 1:1428881/76‑1 (MQ=255) ataACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATa < 1:716777/76‑1 (MQ=255) aCTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAAc < 1:569689/76‑1 (MQ=255) cTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACa > 1:1571155/1‑76 (MQ=255) cTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACa < 1:1074988/76‑1 (MQ=255) ttttAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACaa > 2:1444451/3‑76 (MQ=255) tGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACaa < 1:1208960/76‑1 (MQ=255) tGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACaa < 1:456901/76‑1 (MQ=255) gTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAAt < 1:1278666/76‑1 (MQ=255) ttAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATa < 1:591087/76‑1 (MQ=255) tAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATaa > 2:2066836/1‑76 (MQ=255) tAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATaa > 2:915975/1‑76 (MQ=255) aaTGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATaaa < 1:594867/76‑1 (MQ=255) aaTGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATaaa < 1:1524571/76‑1 (MQ=255) aTGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAg < 1:961929/76‑1 (MQ=255) gCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTa < 1:762531/76‑1 (MQ=255) tAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACa > 1:1241468/1‑76 (MQ=255) aaaaTATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACaa < 1:1164607/76‑1 (MQ=255) aaaTATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAat > 1:1839564/1‑76 (MQ=255) aaTATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAata < 1:71286/76‑1 (MQ=255) aaTATCAAGTAAAGATTCCAGCAGAGGTATTCGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAata < 1:1671428/76‑1 (MQ=255) aaTATCAAGTAAAGATTCCAGCAGAGGTATTCGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAata < 1:1671414/76‑1 (MQ=255) tatCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatata < 1:220986/76‑1 (MQ=255) atCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatatat < 2:24502/76‑1 (MQ=255) atCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatatat > 1:900042/1‑76 (MQ=255) tCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatatata < 1:2061747/76‑1 (MQ=255) tCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatatata > 2:1493750/1‑76 (MQ=255) cAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAatatatat < 1:1077138/76‑1 (MQ=255) aaaGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTa > 1:691739/1‑76 (MQ=255) aGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTAtt < 2:7478/76‑1 (MQ=255) aTTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGa < 1:1778134/76‑1 (MQ=255) aTTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGa > 2:1954044/1‑76 (MQ=255) ccAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAg < 1:1274263/76‑1 (MQ=255) ccAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAg < 2:419443/76‑1 (MQ=255) agcagAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGAc < 1:1358660/76‑1 (MQ=255) gcagAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACa < 1:1342918/76‑1 (MQ=255) gcagAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACa < 2:2075346/76‑1 (MQ=255) agagGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACaaa > 1:19577/1‑76 (MQ=255) gagGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAat < 1:1975590/76‑1 (MQ=255) gagGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAat < 1:275089/76‑1 (MQ=255) gagGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAat < 1:1872414/76‑1 (MQ=255) agGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAata < 1:750670/76‑1 (MQ=255) agGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGAGAGACAAata < 1:279033/76‑1 (MQ=255) gTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATAtt > 1:271019/1‑76 (MQ=255) gTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATAtt < 1:469973/76‑1 (MQ=255) tATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATta < 2:1700825/76‑1 (MQ=255) tGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaata > 1:266069/1‑76 (MQ=255) tGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaata < 1:349852/76‑1 (MQ=255) aGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaa < 2:1000680/76‑1 (MQ=255) aGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaa < 2:1000678/76‑1 (MQ=255) aGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaa > 1:662606/1‑76 (MQ=255) aGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaa < 2:1342513/76‑1 (MQ=255) gAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaat < 2:301058/76‑1 (MQ=255) aaTAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaata > 2:1076862/1‑76 (MQ=255) aaTAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATtaaatataaata > 2:1648786/1‑76 (MQ=255) | AAGTTAGACCATTTGCTATAACTGTTAATGCTAAAATATCAAGTAAAGATTCCAGCAGAGGTATTTGATAGAATAAAGCAATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATA > REL606/2042436‑2042582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |