| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041245 = | 53 (0.870) | 16 (0.280) | 9/140 | 4.8 | 21.3% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 69 (1.210) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041324‑2041245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACAC > REL606/2041495‑2041567 GCCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAA > 2:1948967/1‑76 CCTTACCTGGAGAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAAT > 1:1033737/1‑76 TACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT > 1:1857481/1‑76 TACCTGGAAAAAATATAGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT < 2:1415080/76‑1 GAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAA < 2:978268/76‑1 GAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAA < 2:482704/76‑1 GAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAA < 2:1629360/76‑1 AAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAA < 2:615195/76‑1 AAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAA < 2:1012779/76‑1 ATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGG < 2:642852/76‑1 TATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGT < 2:1418885/76‑1 TATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGT < 2:1169136/76‑1 ATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTT < 2:1286596/76‑1 ATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTT < 2:916652/76‑1 AAAGATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCAT < 2:573148/76‑1 AAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCAT < 2:1481868/76‑1 ATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTT < 2:1206943/76‑1 ATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTT < 2:1176528/76‑1 AATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATA < 2:587497/76‑1 AATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATA < 2:587520/76‑1 TATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACAC < 1:247584/76‑1 GCCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041324‑2041245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACAC > REL606/2041495‑2041567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |