| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041245 = | 53 (0.870) | 16 (0.280) | 9/140 | 4.8 | 21.3% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 69 (1.210) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATATTTTTTCCAGGTA > REL606/2041173‑2041320 | cTTGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATaa < 1:645772/76‑1 (MQ=255)cTTGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATaa < 1:1194069/76‑1 (MQ=255) ttGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGTGATATGCTGCACACCCAAAAATTCACATAAt < 1:1084333/76‑1 (MQ=255) ttGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACAtgct < 2:1069383/76‑4 (MQ=255) ttGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAAt < 1:1812406/76‑1 (MQ=255) ttGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAAt < 1:1251647/76‑1 (MQ=255) tAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAAtttt > 1:1672563/1‑76 (MQ=255) aaTGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAAttttt > 2:1857481/1‑76 (MQ=255) aaTGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAAttttt < 2:396058/76‑1 (MQ=255) tGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTcc < 1:1175685/76‑1 (MQ=255) gCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCt < 1:1295392/76‑1 (MQ=255) gCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCt > 1:793823/1‑76 (MQ=255) aTCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGtt < 1:1764119/76‑1 (MQ=255) tCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTc < 1:204259/76‑1 (MQ=255) aTGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTtg < 1:1045282/76‑1 (MQ=255) aTTGTTGCATTGTTAAAAAGCGAGATGTGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGCTCTTGATGaa > 1:1305757/1‑76 (MQ=255) aTTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGaa > 1:1305742/1‑76 (MQ=255) aTTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGaa > 1:730184/1‑76 (MQ=255) tgttgCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAAt < 2:596437/76‑1 (MQ=255) tgCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGt < 1:446702/76‑1 (MQ=255) aTTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCa > 1:939466/1‑76 (MQ=255) ttGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCat < 1:1837605/76‑1 (MQ=255) gTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattg < 2:1013172/76‑2 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:1155196/76‑1 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:316300/76‑1 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:359041/76‑1 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:361810/76‑1 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:596753/76‑1 (MQ=255) ttAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattat < 1:627859/76‑1 (MQ=255) tAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCattgct < 2:113214/76‑4 (MQ=255) aaaaaGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTAttt < 2:920517/76‑1 (MQ=255) aaaaaGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTAttt > 2:1171800/1‑76 (MQ=255) aaaaaGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTAttt < 2:920509/76‑1 (MQ=255) aaaaGCGAGATATGCTGCACACCCAAAAATTCTCATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTg < 1:81070/76‑1 (MQ=255) aaaGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGt < 1:1360654/76‑1 (MQ=255) aaaGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGt > 2:1337306/1‑76 (MQ=255) aGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCa < 1:873049/76‑1 (MQ=255) aGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCa < 1:1433732/76‑1 (MQ=255) aGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCa < 1:1433730/76‑1 (MQ=255) cGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAAc < 1:1113975/76‑1 (MQ=255) cGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAAc < 1:1717325/76‑1 (MQ=255) tatGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCattt > 1:1745060/1‑76 (MQ=255) atGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCattta > 1:1285134/1‑76 (MQ=255) gctgcACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCatttatt < 1:1106695/76‑1 (MQ=255) tgcACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTAtttt < 2:170545/76‑1 (MQ=255) cacaCCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTc < 1:759259/76‑1 (MQ=255) cacaCCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTc > 2:610135/1‑76 (MQ=255) acacCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTcc < 1:694325/76‑1 (MQ=255) cAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATAtt < 1:1413683/76‑1 (MQ=255) aaaaaTTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATAttt > 2:1329628/1‑76 (MQ=255) aaaTTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATAttttt > 1:341205/1‑76 (MQ=255) ttCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATATTTTTTcc > 1:289581/1‑76 (MQ=255) tCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATATTTTTTCCa < 1:1224128/76‑1 (MQ=255) aTAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCTATATTTTTTCCAGGTa > 2:1415080/1‑76 (MQ=255) aTAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATATTTTTTCCAGGTa < 1:1857481/76‑1 (MQ=255) | CTTGTAATGCTGTGATCAATGCAATTGTTGCATTGTTAAAAAGCGAGATATGCTGCACACCCAAAAATTCACATAATTTTTCCTCGAGTTCTTGATGAAATGGTCCATTATTTGTCAACCATTTATTTTTCCATATTTTTTCCAGGTA > REL606/2041173‑2041320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |