| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3737856 = | 77 (1.260) | 16 (0.290) | 10/136 | 4.3 | 16.3% | intergenic (‑30/+16) | waaL/waaV | Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase |
| ? | REL606 | 3738065 = | 95 (1.710) | coding (791/984 nt) | waaV | putative beta1,3‑glucosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737933‑3737856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaataaCGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > REL606/3738065‑3738138 CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAAT > 2:1925965/1‑76 AAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACG < 2:60437/76‑1 AAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACG < 2:60417/76‑1 AAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACG < 2:1307341/76‑1 ATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAG < 2:577295/76‑1 ATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAG < 2:577284/76‑1 TTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAGGAATAAACGTTAGATCTTGCATTAAATAACGAGT < 2:134304/76‑1 TTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGT < 2:1929765/76‑1 TTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGT < 2:1241655/76‑1 TATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTT < 2:1138497/76‑1 ATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTA < 2:359896/76‑1 TCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATG < 2:64750/76‑1 CTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGA < 2:1840869/76‑1 CTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATA < 2:1049875/76‑1 CTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATA < 2:633963/76‑1 GAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATAAGC < 2:626380/76‑1 GGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAACGAGTTTTATGATAAGCTCTATT < 2:1139420/76‑1 TAAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTAT > 1:84260/1‑76 TAAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTAT > 2:1418423/1‑76 TAAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTAT > 2:494442/1‑76 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATA < 1:252021/76‑1 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATA < 1:1723181/76‑1 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATA < 1:1723186/76‑1 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATA > 1:21039/1‑76 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAA < 2:1009748/41‑1 AAATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAA > 1:1009748/1‑41 AATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAA > 1:705530/1‑76 AATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAA > 1:1620923/1‑76 AATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAA > 1:1246794/1‑76 AATAACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAA < 1:831336/76‑1 AACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > 2:1450658/1‑76 AACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG < 1:1363924/76‑1 AACGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG < 1:863870/76‑1 CAAAAAATTATATTCTCTGGAGGATGGTAAGACTGGTAAATAGGAAAAAGAATAAACGTTAGATCTTGCATTAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3737933‑3737856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaataaCGAGTTTTATGATAAGCTCTATTTTGACTCAATAATGTATGAATTTCTTCTTTCCGGTTACCTTTGTATAACTG > REL606/3738065‑3738138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |