| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2199003 = | 6 (0.100) | 64 (1.050) | 48/150 | 0.2 | 91.4% | coding (768/1470 nt) | lysP | lysine transporter |
| ? | REL606 | = 2199011 | NA (NA) | coding (760/1470 nt) | lysP | lysine transporter | |||||
TGTCTTTAACATCGTTACGCAGCAGGCTCGGATCGGTGTACGGAATAATGAGGCTGATAATCAGGATCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGACTCGCC > REL606/2198936‑2199086 | catcgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacaccgcgaacac < 2:1285599‑M1/9‑1 (MQ=255)catcgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacaccgcgaacac < 1:1428154‑M1/9‑1 (MQ=255) atcgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAAcaca > 2:1133106‑M1/67‑76 (MQ=255) atcgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAAcaca < 1:249528‑M1/10‑1 (MQ=255) tcgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACAt > 2:750985‑M1/66‑76 (MQ=255) cgttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATa > 1:989353‑M1/65‑76 (MQ=255) gttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAg > 1:811916‑M1/64‑76 (MQ=255) ttacgcagcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGa < 2:758794‑M1/14‑1 (MQ=255) cagcaggctcggatctgtgtgcggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGaacaac > 1:324434‑M1/58‑76 (MQ=255) agcaggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAacaaca < 2:1943882‑M1/20‑1 (MQ=255) cGTTACGCAGCAGGCTCGGATCGGTGTACGGAATAATGAGGCTGATAATCAGGATCGCGAACACATAGAACAACAg < 1:1172092/76‑1 (MQ=255) caggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAgg > 1:767683‑M1/55‑76 (MQ=255) aggctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGa < 1:682142‑M1/23‑1 (MQ=255) ggctcggatcggtggacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGAt > 1:1930431‑M1/53‑76 (MQ=255) ctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTc < 2:1917158‑M1/26‑1 (MQ=255) ctcggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTc < 2:798499‑M1/26‑1 (MQ=255) cggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGc > 1:1344609‑M1/49‑76 (MQ=255) ggatcggtgtacggaataatgaggctgataatcaggatcgcgaacacAGAGAACACATAGAACAACAGGAATCGcc < 1:136571‑M1/29‑1 (MQ=255) gatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCa < 1:735344‑M1/30‑1 (MQ=255) gatcggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCa > 2:1447439‑M1/47‑76 (MQ=255) ggtgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAac < 2:410181‑M1/34‑1 (MQ=255) tgtacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAacac > 1:1172205‑M1/41‑76 (MQ=255) tacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCt > 1:589375‑M1/39‑76 (MQ=255) tacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCt < 2:1797200‑M1/38‑1 (MQ=255) tacggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCt < 2:158171‑M1/38‑1 (MQ=255) acggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTg > 1:302742‑M1/38‑76 (MQ=255) acggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTg < 2:371938‑M1/39‑1 (MQ=255) acggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTg > 1:17724‑M1/38‑76 (MQ=255) acggaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTg > 1:1542840‑M1/38‑76 (MQ=255) gaataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACg < 2:704541‑M1/42‑1 (MQ=255) ataatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTa < 2:637365‑M1/44‑1 (MQ=255) taatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTAc < 1:226285‑M1/45‑1 (MQ=255) taatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTAc < 1:848348‑M1/45‑1 (MQ=255) aatgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTAcc < 2:1732315‑M1/46‑1 (MQ=255) atgaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACcg < 1:1151985‑M1/47‑1 (MQ=255) gaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACcgcg < 2:527708‑M1/49‑1 (MQ=255) gaggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACcgcg > 2:1479320‑M1/28‑76 (MQ=255) ggctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACcgcgcg > 1:1787592‑M1/26‑76 (MQ=255) ctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTg < 2:1195927‑M1/53‑1 (MQ=255) ctgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTg > 2:1285640‑M1/24‑76 (MQ=255) ctgataatcaggatcgcaaacacCGCGCACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTg < 2:1195915‑M1/53‑1 (MQ=255) tgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTgg < 1:195748‑M1/54‑1 (MQ=255) tgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTgg < 2:940911‑M1/54‑1 (MQ=255) tgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTgg < 1:861626‑M1/54‑1 (MQ=255) tgataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTgg > 2:843439‑M1/23‑76 (MQ=255) ataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGaa < 2:407749‑M1/56‑1 (MQ=255) ataatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGGGGaa < 1:636189‑M1/56‑1 (MQ=255) taatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGgaac < 2:498353‑M1/57‑2 (MQ=255) taatcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAAt < 1:1491724‑M1/57‑1 (MQ=255) tcaggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGtt > 1:1732315‑M1/17‑76 (MQ=255) caggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGttt < 2:511826‑M1/61‑1 (MQ=255) aggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGtttt < 2:997081‑M1/62‑1 (MQ=255) aggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGtttt < 2:735524‑M1/62‑1 (MQ=255) aggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGtttt < 1:1309474‑M1/62‑1 (MQ=255) ggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGttttt > 2:1594700‑M1/14‑76 (MQ=255) ggatcgcgaacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGttttt > 2:1211400‑M1/14‑76 (MQ=255) aacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGAt > 2:1151985‑M1/6‑76 (MQ=255) aacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGAt > 2:1510380‑M1/6‑76 (MQ=255) aacacCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGAt < 1:129767‑M1/71‑1 (MQ=255) acCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCtt > 2:157318‑M1/3‑76 (MQ=255) gAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGAc > 2:108793/1‑76 (MQ=255) gAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGAc > 1:1008814/1‑76 (MQ=255) aaCACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGACt > 2:1043943/1‑76 (MQ=255) caTAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGACTCGcc > 1:1938752/1‑76 (MQ=255) caTAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGACTCGcc > 1:11440/1‑76 (MQ=255) | TGTCTTTAACATCGTTACGCAGCAGGCTCGGATCGGTGTACGGAATAATGAGGCTGATAATCAGGATCGCGAACACATAGAACAACAGGATTCGCCAGAACACCTGACGTACCGCGCGTGGAATGTTTTTCGCCGGATCTTCGGACTCGCC > REL606/2198936‑2199086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |