| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2036832 = | 54 (0.920) | 7 (0.130) | 6/136 | 5.5 | 12.4% | coding (127/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| ? | REL606 | 2037060 = | 50 (0.940) | coding (1071/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2036913‑2036832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaataaAAACACTAACCAAAACAACCATCTCATATTCATTGCATATAGGTCATTCGCAATAATTTTAGATAGCATTGT > REL606/2037060‑2037131 TATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTG < 1:1545954/76‑1TATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTG > 1:463493/1‑76 ATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGA > 1:1506515/1‑76 ATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGA > 2:783583/1‑76 ATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGA > 2:1109746/1‑76 TATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAA < 1:644395/76‑1 TATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAA < 1:644410/76‑1 ATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAAT < 2:701875/76‑1 GTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAA < 2:156483/76‑1 GGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACAC < 2:936637/76‑1 GTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACACTAA < 2:1857752/76‑1 TATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACACTAAC < 2:952209/76‑1 AGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACACTAACCAAAACAA < 2:677162/76‑1 ATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACACTAACCAAAACAACCATCTCAT < 2:819680/76‑1 ATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAAAAACACTAACCAAAACAACCATCTCAT < 2:819684/76‑1 AAATAAAAACACTAACCAAAACAACCATCTCATATTCATTGCATATAGGTCATTCGCAATAATTTTAGATAGCATT < 1:1501633/76‑1 ATAAAAACACTAACCAAAACAACCATCTCATATTCATTGCATATAGGTCATTCGCAATAATTTTAGATAGCATTGT < 1:701875/76‑1 TATTATGGGGTTGGAGTATACTTTAGAGATTTAATTGCAAAAAATATTAATGAAATATTCGATGGGATTGATTGTGAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2036913‑2036832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaataaAAACACTAACCAAAACAACCATCTCATATTCATTGCATATAGGTCATTCGCAATAATTTTAGATAGCATTGT > REL606/2037060‑2037131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |