New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2042091 =	53 (0.900)	8 (0.150)	7/140	5.2	10.7%	coding (730/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2042518 =	84 (1.530)					coding (303/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2042154‑2042091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAA  >  REL606/2042518‑2042590                                                                                                                                           TTTTATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATTTAAGAAGATAA                                                               <  2:421127/76‑1  TTTATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATATAAGAAGATAAA                                                              <  2:1175459/76‑1   TTATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATTAAAGAAGATAAAC                                                             <  2:1637319/76‑1     ATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATTAAAGAAGATAAACAA                                                           <  2:111735/76‑1         AAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATATAAGAAGATAAACAATAAA                                                       <  2:343250/76‑1                  TCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATTTAAGAAGAAAAACAAAAAAGAACAATAT                                              <  2:517852/76‑1                  TCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATTTAAGAAGAAAAACAAAAAAGAACAATAT                                              <  2:517855/76‑1                   CAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAATATAAGAAGATAAACAATAAAGTACAATATA                                             <  2:359385/76‑1                                                              AATATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAA  >  1:1817127/1‑76                                                                                                                                           TTTTATTCAAATATATATCAATTAATTATAGGGAAATTTTTTACACCACAGCTTGTAGGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2042154‑2042091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatATAAGAAGATAAACAATAAAGTACAATATATATTAGTATTGATAGACAAATATTAAATATAAATACTGTCGAA  >  REL606/2042518‑2042590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.