New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2042091 =	53 (0.900)	8 (0.150)	7/140	5.2	10.7%	coding (730/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2042518 =	84 (1.530)					coding (303/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGT  >  REL606/2042021‑2042164                                                                       |                                                                          tAAGTTACTCTCTGAATAATATTAGTAAGTGTAATTGCAGGTAGGCTAGAGATCTGATTAGCATGTGTAAATTGcc                                                                      >  1:784080/1‑76 (MQ=255)     ttACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTAc                                                                  >  1:1118640/1‑76 (MQ=255)     ttACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTAc                                                                  >  1:406168/1‑76 (MQ=255)     ttACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTAc                                                                  >  1:1839074/1‑76 (MQ=255)     ttACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTAc                                                                  >  1:1484648/1‑76 (MQ=255)     ttACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTAc                                                                  >  2:356280/1‑76 (MQ=255)      tACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACa                                                                 <  1:801923/76‑1 (MQ=255)        ctctctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAg                                                               >  2:1421464/1‑76 (MQ=255)         tctctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGc                                                              <  1:716828/76‑1 (MQ=255)         tctctGAATAATATTAGTAAGTGTCATTGCAGGTACACTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAgt                                                              <  1:716840/76‑2 (MQ=255)          ctctGAATAATATTCGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACACGcc                                                             >  2:495027/1‑75 (MQ=255)          ctctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCt                                                             >  1:954498/1‑76 (MQ=255)           tctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtg                                                            >  1:807899/1‑76 (MQ=255)           tctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtg                                                            <  2:1104664/76‑1 (MQ=255)           tctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtg                                                            <  1:1430518/76‑1 (MQ=255)            ctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgt                                                           >  2:1491015/1‑76 (MQ=255)            ctGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgt                                                           >  2:1491032/1‑76 (MQ=255)             tGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgtg                                                          >  2:1621857/1‑76 (MQ=255)             tGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgtg                                                          >  1:603188/1‑76 (MQ=255)             tGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgtg                                                          >  1:47807/1‑76 (MQ=255)             tGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCtgtg                                                          >  1:47805/1‑76 (MQ=255)              gAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTgtgg                                                         >  1:697607/1‑76 (MQ=255)                ataataTTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTgtggtg                                                       <  2:773620/76‑1 (MQ=255)                       tAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTaaaaaa                                                <  2:221308/76‑1 (MQ=255)                               gtCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCta                                        <  2:402842/76‑1 (MQ=255)                                tCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCtat                                       <  1:1846733/76‑1 (MQ=255)                                 cATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCtata                                      >  1:1336844/1‑76 (MQ=255)                                 cATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCtata                                      >  1:1464809/1‑76 (MQ=255)                                   ttGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTAtaat                                    <  2:1310551/76‑1 (MQ=255)                                      cAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTAtaattaa                                 >  1:817676/1‑76 (MQ=255)                                               tAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatatat                        <  1:577862/76‑1 (MQ=255)                                               tAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatatat                        <  1:607805/76‑1 (MQ=255)                                               tAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatatat                        <  1:607818/76‑1 (MQ=255)                                                agagATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGatatata                       <  1:1795867/76‑1 (MQ=255)                                                   gaTCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATAttt                    <  2:1496369/76‑1 (MQ=255)                                                       tGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAAt                >  2:1006795/1‑76 (MQ=255)                                                       tGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAAt                <  1:1757789/76‑1 (MQ=255)                                                       tGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAAt                <  2:1820301/76‑1 (MQ=255)                                                       tGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAAt                <  2:1820285/76‑1 (MQ=255)                                                        gATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATa               >  1:718440/1‑76 (MQ=255)                                                         aTTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATaa              <  2:748808/76‑1 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          <  1:1206048/76‑1 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          >  1:577783/1‑76 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          <  1:367683/76‑1 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          <  1:1826032/76‑1 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          <  1:1206063/76‑1 (MQ=255)                                                             gCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAg          <  1:1206062/76‑1 (MQ=255)                                                               cTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCt        <  1:336169/76‑1 (MQ=255)                                                                 gtgtAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTc      <  1:178911/76‑1 (MQ=255)                                                                 gtgtAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTc      <  1:178905/76‑1 (MQ=255)                                                                 gtgtAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTc      <  1:178892/76‑1 (MQ=255)                                                                     aaaTTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAgc  >  2:795175/1‑75 (MQ=255)                                                                     aaaTTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGt  >  2:1622276/1‑76 (MQ=255)                                                                       |                                                                          TAAGTTACTCTCTGAATAATATTAGTAAGTGTCATTGCAGGTACGCTAGAGATCTGATTAGCCTGTGTAAATTGCCCTACAAGCTGTGGTGTAAAAAATTTCCCTATAATTAATTGATATATATTTGAATAAAAAGCTTCAAGT  >  REL606/2042021‑2042164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.