| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3737261 | 87 (1.480) | 6 (0.110) | 6/142 | 5.7 | 6.7% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 85 (1.530) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACAT > REL606/3737620‑3737770 | tAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGat < 1:479454/76‑1 (MQ=255) aTGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGatat > 2:917616/1‑76 (MQ=255) aTGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGatat < 1:249944/76‑1 (MQ=255) aTGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGatat < 1:249958/76‑1 (MQ=255) aTGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGatat > 1:525648/1‑76 (MQ=255) gagaTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATaa > 1:14758/1‑76 (MQ=255) gagaGGAAAATTAACAAAGTAGGATTATTAGTTATTTTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATaa < 1:796920/76‑1 (MQ=255) agaTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAAt > 2:1848537/1‑76 (MQ=255) aTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTc < 1:1823220/76‑1 (MQ=255) aaTTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCt > 1:1242812/1‑76 (MQ=255) aTTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTg < 1:429758/76‑1 (MQ=255) tAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCa < 2:538970/76‑1 (MQ=255) aaCAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCAt > 2:430780/1‑76 (MQ=255) aCAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATg < 1:750905/76‑1 (MQ=255) cAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATga < 1:1159153/76‑1 (MQ=255) cAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATga < 1:1666797/76‑1 (MQ=255) aaGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgcca < 2:1529690/76‑4 (MQ=255) aaGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaag > 2:1564767/1‑76 (MQ=255) aGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaaga < 1:1812565/76‑1 (MQ=255) gTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaagaa > 2:1661589/1‑76 (MQ=255) tAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGaaa < 2:157506/76‑1 (MQ=255) tAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGaaa > 1:1143226/1‑76 (MQ=255) attattAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACttt > 1:924979/1‑76 (MQ=255) attattAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACttt < 2:827861/76‑1 (MQ=255) attattAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACttt > 1:1673993/1‑76 (MQ=255) tattaGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTttgt > 1:293210/1‑76 (MQ=255) attaGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTttgtt > 1:1795949/1‑76 (MQ=255) aGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCa > 2:1185340/1‑76 (MQ=255) aGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCa > 1:1747338/1‑76 (MQ=255) gTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCaa > 1:1661931/1‑76 (MQ=255) gTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCaa > 1:1661938/1‑76 (MQ=255) gTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCaa > 1:1484222/1‑76 (MQ=255) ttATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAc < 2:310164/76‑1 (MQ=255) tATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAca < 2:161881/76‑1 (MQ=255) aTTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcat > 1:325774/1‑76 (MQ=255) aTTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcat > 1:1430526/1‑76 (MQ=255) tGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatca > 1:1448868/1‑76 (MQ=255) tGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatca > 1:1448896/1‑76 (MQ=255) tGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatca > 1:1104406/1‑76 (MQ=255) tGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatca > 1:1448876/1‑76 (MQ=255) gTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatcat > 1:1249755/1‑76 (MQ=255) gTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatcat > 1:1382468/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 1:1268378/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 1:568479/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 2:1446884/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 1:1268377/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 1:1268359/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc < 2:205034/76‑1 (MQ=255) tttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCa > 1:1389370/1‑76 (MQ=255) ttttGGTGTCATTAGAAGATGCAATGCAGATATAATTCCAGCTGCATGAAGGAACTGGGCTGCAACATCGTCCCag < 2:969414/76‑2 (MQ=255) tttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATa > 1:1170617/1‑76 (MQ=255) ttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaa < 1:635802/76‑1 (MQ=255) ttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaa < 2:354067/76‑1 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:1509958/1‑76 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:1509999/1‑76 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:1819529/1‑76 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:1509989/1‑76 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:1509977/1‑76 (MQ=255) tGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATaaa > 1:275751/1‑76 (MQ=255) tgtCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGAc > 1:708350/1‑76 (MQ=255) tCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaa < 1:1251495/76‑1 (MQ=255) tCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaa < 1:28601/76‑1 (MQ=255) cATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaaa < 1:515750/76‑1 (MQ=255) cATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaaa < 1:515740/76‑1 (MQ=255) cATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaaa > 1:1495532/1‑76 (MQ=255) aTTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAg < 1:1216242/76‑1 (MQ=255) ttAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGt > 1:924590/1‑76 (MQ=255) tAGAAAATCCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtc > 2:1249390/1‑76 (MQ=255) tAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtc > 2:793440/1‑76 (MQ=255) aGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtca < 2:1744391/76‑1 (MQ=255) gAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcat < 1:635149/76‑1 (MQ=255) gAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcat < 1:1875682/76‑1 (MQ=255) aaaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcatca < 2:501660/76‑1 (MQ=255) aaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaa < 1:478920/76‑1 (MQ=255) aTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaaa < 1:1394535/76‑1 (MQ=255) tACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAg < 1:1489710/76‑1 (MQ=255) tACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAg > 2:1123351/1‑76 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa < 1:940273/76‑1 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa < 1:1558471/76‑1 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa < 1:1595203/76‑1 (MQ=255) aaTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaa > 2:1506935/1‑76 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa < 1:1227738/76‑1 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa < 1:1881523/76‑1 (MQ=255) aTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaaa > 1:1608420/1‑76 (MQ=255) cAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt < 1:697621/76‑1 (MQ=255) aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa > 1:1381781/1‑76 (MQ=255) aGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATa < 1:1877384/76‑1 (MQ=255) gATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATAc > 2:1080980/1‑76 (MQ=255) gATATAATTCCAGCTGCACGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATAc < 1:294709/76‑1 (MQ=255) atatAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACa < 1:1503608/76‑1 (MQ=255) atatAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACa < 1:1503595/76‑1 (MQ=255) tataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACat > 2:1345473/1‑76 (MQ=255) | TAATGAGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACAT > REL606/3737620‑3737770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |