| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 76 [1] | [4] 76 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 1 (0.020) | 62 (1.530) | 43/104 | 0.0 | 96.4% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 4 (0.100) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCC > REL606/2122379‑2122528 | gCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTAttttttt < 1:971242/76‑1 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:620455‑M2/76‑76 (MQ=255)aacccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttt > 2:1338146‑M2/76‑76 (MQ=255) ataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCa > 2:696527‑M2/71‑76 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa > 2:827135‑M2/69‑76 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa < 2:1309782‑M2/9‑1 (MQ=255) aaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATaa < 1:1545055‑M2/9‑1 (MQ=255) aatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAg < 1:1865592‑M2/10‑1 (MQ=255) atgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGc < 1:171628‑M2/11‑1 (MQ=255) tgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc < 1:133574‑M2/12‑1 (MQ=255) tgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc > 1:906179‑M2/65‑76 (MQ=255) tgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGcc > 1:168483‑M2/65‑76 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt > 2:1765283‑M2/63‑76 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:1294437‑M2/15‑1 (MQ=255) gTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTAt < 1:1200827/76‑1 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt < 1:1806791‑M2/16‑1 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt < 2:158702‑M2/16‑1 (MQ=255) agctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAt < 2:1402316‑M2/16‑1 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtctc > 1:1567663‑M2/58‑76 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct > 2:340024‑M2/57‑76 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct > 2:1374170‑M2/57‑76 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg > 2:109540‑M2/56‑76 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg < 1:923569‑M2/21‑1 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg < 1:923556‑M2/21‑1 (MQ=255) accaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTgg > 1:1554617‑M2/55‑76 (MQ=255) ccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGt < 1:1632246‑M2/23‑1 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 2:1652058‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 2:1549260‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 1:550137‑M2/53‑76 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa > 2:1661154‑M2/52‑76 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttatttgttTATGCATAAGCCCTATCTCTGGTaa < 1:229200‑M2/25‑1 (MQ=255) ggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAc < 1:67110‑M2/26‑1 (MQ=255) ggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAc > 2:1763793‑M2/51‑76 (MQ=255) gaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAAcc > 2:618319‑M2/50‑76 (MQ=255) accacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGt > 2:1614177‑M2/48‑76 (MQ=255) ccTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCt > 1:1198990/1‑76 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 1:1494140‑M2/32‑1 (MQ=255) tGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAt > 2:1852486/1‑76 (MQ=255) ccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCAt < 1:1616140‑M2/36‑1 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg > 2:993565‑M2/39‑76 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:1383483‑M2/38‑1 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:1501401‑M2/38‑1 (MQ=255) ttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTg < 1:168263‑M2/38‑1 (MQ=255) tagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGa > 2:749964‑M2/38‑76 (MQ=255) tagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGa > 2:1236048‑M2/38‑76 (MQ=255) tagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGa > 1:1624989‑M2/38‑76 (MQ=255) tagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGa > 1:1775147‑M2/38‑76 (MQ=255) agcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGAAACGGTCTTCAAttgcc > 2:872179‑M2/37‑74 (MQ=255) gcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAcc > 2:1051575‑M2/36‑76 (MQ=255) cctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACca > 2:1320510‑M2/35‑76 (MQ=255) ctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcac > 2:1488773‑M2/34‑76 (MQ=255) ctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcac < 1:1718666‑M2/43‑1 (MQ=255) ctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcac > 2:948268‑M2/34‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt > 2:1259‑M2/32‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt > 1:1315378‑M2/32‑76 (MQ=255) gtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACAt < 2:1434634‑M2/45‑1 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc > 2:1078076‑M2/31‑76 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc < 1:1610765‑M2/46‑1 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc > 1:6577‑M2/31‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg > 1:498734‑M2/30‑76 (MQ=255) taatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGa < 2:1188209‑M2/48‑1 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt > 2:1719516‑M2/28‑76 (MQ=255) atctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATa < 1:19861‑M2/50‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:1859390‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:1346058‑M2/52‑1 (MQ=255) ctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGa < 1:1346080‑M2/52‑1 (MQ=255) tacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcctc > 2:1390646‑M2/19‑76 (MQ=255) cacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATcctcct < 1:983910‑M2/60‑1 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg < 1:145132‑M2/66‑1 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg > 2:348319‑M2/11‑76 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg > 2:1024514‑M2/11‑76 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg < 2:1422598‑M2/66‑1 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCATCATAg < 1:847662‑M2/66‑1 (MQ=255) ttattttttTATGCATAAGCCCTCTCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGc > 2:8852‑M2/10‑76 (MQ=255) ttttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACg > 1:1533391‑M2/7‑76 (MQ=255) tTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGcc > 2:160616‑M2/2‑76 (MQ=255) | GCTCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGCC > REL606/2122379‑2122528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |