| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041245 = | 50 (0.840) | 14 (0.250) | 11/140 | 4.1 | 17.6% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 84 (1.520) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041323‑2041245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAC > REL606/2041495‑2041546 CCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAAT > 1:64201/1‑76CCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAAT > 1:956715/1‑76CCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAAT > 1:956724/1‑76 CTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATT > 1:1219726/1‑76 CTTACCTGGAAAAAATATGGAAAAATAAATGGGTGACCAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATT > 1:1219741/1‑76 TGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTT < 2:422204/76‑1 GAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAA < 2:384537/76‑1 GAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAA < 2:1461729/76‑1 AAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAA < 2:22621/76‑1 AAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAA < 2:222507/76‑1 TGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTC < 2:52633/76‑1 TGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTC < 2:52636/76‑1 AATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACT < 2:1118407/76‑1 TGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTC < 2:11848/76‑1 ACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTAT < 2:825649/76‑1 AATGGACCAGTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATA < 2:586795/76‑1 ACCATTTCATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAG < 2:1826091/76‑1 ATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTAAGAACCAAAC < 2:652508/76‑1 ATCAAGAACTCGAGGAAAAATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTAAGAACCAAAC < 2:652527/76‑1 CCTTACCTGGAAAAAATATGGAAAAATAAATGGTTGACAAATAATGGACCATTTCATCAAGAACTCGAGGAAAAATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2041323‑2041245‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAC > REL606/2041495‑2041546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |