New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041245 =	50 (0.840)	14 (0.250)	11/140	4.1	17.6%	coding (139/1113 nt)	vioA	VioA, involved in dTDP‑N‑acetylviosamine synthesis
	?	REL606	2041495 =	84 (1.520)					coding (1326/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACACCAT  >  REL606/2041420‑2041570                                                                            |                                                                            cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                                                             >  2:449907/1‑76 (MQ=255) cATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattata                                                                             <  1:52089/76‑1 (MQ=255)  aTAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatat                                                                            <  1:987754/76‑1 (MQ=255)  aTAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAatattatat                                                                            <  1:749412/76‑1 (MQ=255)    aaaTATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATAttt                                                                          <  1:422204/76‑1 (MQ=255)    aaaTAATTCTTTGTTCATAAATCGAAATAGGGGGATGGATATAATGGCATTTAATAAAATAGTAAATATTATAttt                                                                          <  1:1473377/76‑1 (MQ=255)      atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                                                        <  1:1699735/76‑1 (MQ=255)      atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                                                        <  1:384537/76‑1 (MQ=255)      atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                                                        <  1:1699751/76‑1 (MQ=255)      atatTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaa                                                                        <  1:1461729/76‑1 (MQ=255)        atTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATttatta                                                                      <  1:1150265/76‑1 (MQ=255)        atTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaata                                                                      <  2:1124315/76‑1 (MQ=255)         tttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTtaataa                                                                     <  1:22621/76‑1 (MQ=255)          ttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATaaa                                                                    <  1:222507/76‑1 (MQ=255)          ttCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATaaa                                                                    <  1:393376/76‑1 (MQ=255)           tCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAg                                                                   <  1:968373/76‑1 (MQ=255)             tttGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGt                                                                 >  1:1139142/1‑76 (MQ=255)               tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                                               <  1:52633/76‑1 (MQ=255)               tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                                               >  1:548370/1‑76 (MQ=255)               tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                                               <  1:52636/76‑1 (MQ=255)               tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                                               >  1:548363/1‑76 (MQ=255)               tGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTc                                                               >  1:548373/1‑76 (MQ=255)                ttACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTcc                                                              >  2:513956/2‑76 (MQ=255)                ttACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTcc                                                              >  2:513958/2‑76 (MQ=255)                 tACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCa                                                             <  1:1313203/76‑1 (MQ=255)                 tACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCa                                                             >  2:1805632/1‑76 (MQ=255)                  aCATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCAt                                                            <  1:1474410/76‑1 (MQ=255)                  aCATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCAt                                                            >  1:1824026/1‑76 (MQ=255)                   cATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATa                                                           <  1:15601/76‑1 (MQ=255)                     tAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACt                                                         <  1:1118407/76‑1 (MQ=255)                      aaTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACtt                                                        >  1:655955/1‑76 (MQ=255)                       aTTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTa                                                       >  1:107026/1‑76 (MQ=255)                        ttCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAt                                                      >  1:57590/1‑76 (MQ=255)                         tCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAtt                                                     >  1:1335417/1‑76 (MQ=255)                          ggAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAttt                                                    <  1:832226/75‑1 (MQ=255)                          cGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTAttt                                                    <  2:429291/76‑1 (MQ=255)                           gAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTc                                                   <  1:11848/76‑1 (MQ=255)                             aTTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCAt                                                 >  1:1497136/1‑76 (MQ=255)                                 gtgtGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtat                                             <  1:1310026/76‑1 (MQ=255)                                 gtgtGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtat                                             <  1:825649/76‑1 (MQ=255)                                  tgtgATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtata                                            <  2:364422/76‑1 (MQ=255)                                  tgtgATGTATATAATGGCATGTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTtata                                            <  1:364422/76‑1 (MQ=255)                                   ttgATGTATATAATGGCATTTAGTAAGAGAGGAAATATTATATTTAATAAAGGTTCCATGCTTATTTCATTTataa                                           <  2:520947/75‑1 (MQ=255)                                   gtgATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTataa                                           <  1:520947/76‑1 (MQ=255)                                   gtgATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTataa                                           <  1:768461/76‑1 (MQ=255)                                      aTGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAatat                                        >  2:1581578/1‑76 (MQ=255)                                       tGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAAtata                                       <  1:586772/76‑1 (MQ=255)                                       tGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTACAAtata                                       <  1:586795/76‑1 (MQ=255)                                        gTATATAATGGCATTTGATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAg                                      <  1:1017789/76‑1 (MQ=255)                                        gTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAg                                      <  1:1159261/76‑1 (MQ=255)                                        gTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAg                                      <  2:516975/76‑1 (MQ=255)                                        gTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTCCATTTATAATATAg                                      <  1:1159287/76‑1 (MQ=255)                                         tatataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGt                                     <  1:1723750/76‑1 (MQ=255)                                         tatataATGGCATTTAATAAAATAGTAAATATTATATTTAACAAAGGTTCCATACTTATTTCATTTATAATATAGt                                     <  1:1723735/76‑1 (MQ=255)                                         gatataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGt                                     <  2:1723735/75‑1 (MQ=255)                                         gatataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGt                                     <  2:1723750/75‑1 (MQ=255)                                          atataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGtt                                    <  2:1403148/76‑1 (MQ=255)                                          atataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGtt                                    <  1:1468437/76‑1 (MQ=255)                                          atataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGtt                                    <  1:1403148/76‑1 (MQ=255)                                          atataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGtt                                    <  1:1468416/76‑1 (MQ=255)                                           tataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTa                                   >  1:894082/1‑76 (MQ=255)                                           tataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTa                                   >  2:1910518/1‑76 (MQ=255)                                           tataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTa                                   <  2:1497136/76‑1 (MQ=255)                                            ataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAg                                  <  1:1826091/76‑1 (MQ=255)                                            ataATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAg                                  >  2:1709251/1‑76 (MQ=255)                                                tGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAAcc                              >  1:322956/1‑76 (MQ=255)                                                tGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAAcc                              >  1:322965/1‑76 (MQ=255)                                                   cATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTaa                           >  1:1397471/1‑76 (MQ=255)                                                    aTTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAc                          <  1:652508/76‑1 (MQ=255)                                                    aTTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAc                          <  1:652527/76‑1 (MQ=255)                                                     tttAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAcc                         >  2:1489157/1‑76 (MQ=255)                                                     tttAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAcc                         <  1:646661/76‑1 (MQ=255)                                                     tttAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAcc                         >  1:852438/1‑76 (MQ=255)                                                     tttAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAcc                         >  1:852416/1‑76 (MQ=255)                                                      ttAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAAccc                        <  2:1294101/76‑1 (MQ=255)                                                          taaAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTa                    >  2:619967/1‑76 (MQ=255)                                                           aaaaTAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTaa                   >  1:1468274/1‑76 (MQ=255)                                                           aaaaTAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTaa                   >  1:1468294/1‑76 (MQ=255)                                                           aaaaTAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTaa                   >  1:1847936/1‑76 (MQ=255)                                                             aaTAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAAtt                 >  2:1726689/1‑76 (MQ=255)                                                               tAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTaa               >  1:1723289/1‑76 (MQ=255)                                                                aGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAAttcga              <  2:1335417/76‑4 (MQ=255)                                                                   aaaTATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACAt           >  2:1841636/1‑76 (MQ=255)                                                                     atattatattTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAg         <  1:91369/76‑1 (MQ=255)                                                                            attTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACACCat  >  2:1636058/1‑76 (MQ=255)                                                                            attTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACACCat  >  1:1883358/1‑76 (MQ=255)                                                                            |                                                                            CATAAATATTTCTTTGTACATAATTCGAATTAGTGTGATGTATATAATGGCATTTAATAAAATAGTAAATATTATATTTAATAAAGGTTCCATACTTATTTCATTTATAATATAGTTAGAACCTAACCCACTAATTAAACATAGACACCAT  >  REL606/2041420‑2041570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.