| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3582336 | 92 (1.550) | 16 (0.290) | 12/140 | 3.9 | 16.3% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 78 (1.410) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3582257‑3582336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTTATGA < REL606/3582485‑3582411 AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTA > 1:1298690/1‑76AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTA < 1:647456/76‑1AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTA > 2:58824/1‑76AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTA > 2:1535087/1‑76 TCTTATTACTAACATTGACACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAAT > 2:261471/1‑76 CTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATA > 1:23253/1‑76 TTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA < 1:1348313/76‑1 TTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA < 1:1348328/76‑1 TTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA < 1:1783740/76‑1 TTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA < 1:556150/76‑1 AACAGACACAATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGG > 2:983937/1‑76 AACAGACACAATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGG > 2:80194/1‑76 ACAGACACAATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGG > 2:249287/1‑76 ACAATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCC > 2:1258825/1‑76 ACAATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCC > 2:915596/1‑76 AATCAATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCT > 2:207027/1‑76 CAATACTTAATCAGATTAATAACATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTT > 2:396790/1‑76 ATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCT > 2:958511/1‑76 ATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCT > 2:160217/1‑76 ATACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCT > 2:1151221/1‑76 ACTTAATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTAC > 2:976095/1‑76 ATCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAA > 2:196627/1‑76 TCAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAAT > 2:401433/1‑76 CAGATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATT > 2:142794/1‑76 GATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTT > 2:405108/1‑76 ATTAATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTA > 2:1357259/1‑76 AATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTT > 2:138716/1‑76 ATAAAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTTA < 2:341440/76‑1 AAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTTATGA < 1:1530200/76‑1 AAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTTATGA < 1:1212070/76‑1 AGTCTTATTACTAACATTGAAACGATAAGTTCGACACAACTTACGCAACAGACACAATCAATACTTAATCAGATTAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3582257‑3582336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaAATTAGTATCTGAAAACATGGTTTGGACACTGAATGTTATGGGTATTCCCTCTTCTACGCTAATTTTAGTTATGA < REL606/3582485‑3582411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |