New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2038074 =	73 (1.230)	12 (0.230)	9/134	4.6	16.7%	coding (57/1176 nt)	wzy	O antigen polymerase (Wzy)
	?	REL606	2038286 =	55 (1.040)					coding (663/822 nt)	wbbB	putative glycosyltransferase WbbB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAGTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCCTCT  >  REL606/2038000‑2038149                                                                           |                                                                            gttgTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCaa                                                                            >  2:955682/4‑76 (MQ=255) aCAGTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCaa                                                                            <  1:996051/76‑1 (MQ=255) aCAGTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCaa                                                                            <  1:1537893/76‑1 (MQ=255)   aGTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAata                                                                          <  1:20857/76‑1 (MQ=255)     tttCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATAtt                                                                        <  1:1602045/76‑1 (MQ=255)        cTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAg                                                                     <  2:616806/76‑1 (MQ=255)          gATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCg                                                                   <  1:231584/76‑1 (MQ=255)          gATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCg                                                                   <  1:44372/76‑1 (MQ=255)            tttAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTa                                                                 >  2:1152947/1‑76 (MQ=255)            tttAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTa                                                                 <  1:1586956/76‑1 (MQ=255)              tAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAg                                                               >  2:1285189/1‑76 (MQ=255)              tAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAg                                                               >  2:1285180/1‑76 (MQ=255)              tAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAg                                                               <  1:922987/76‑1 (MQ=255)               aaaCCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGa                                                              <  1:309421/76‑1 (MQ=255)               aaaCCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGa                                                              <  1:1330147/76‑1 (MQ=255)                 aCCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAAt                                                            <  1:550898/76‑1 (MQ=255)                 aCCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAAt                                                            <  1:224136/76‑1 (MQ=255)                 aCCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAAt                                                            <  1:220701/76‑1 (MQ=255)                  ccccATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAAtt                                                           <  1:1425514/76‑1 (MQ=255)                    ccATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAg                                                         <  1:887512/76‑1 (MQ=255)                     cATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGt                                                        <  1:515954/76‑1 (MQ=255)                     cATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGt                                                        >  1:708927/1‑76 (MQ=255)                     cATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGt                                                        <  1:803120/76‑1 (MQ=255)                       ttAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTaa                                                      <  1:893257/76‑1 (MQ=255)                         aaaTCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAAtg                                                    <  1:1754555/76‑1 (MQ=255)                          aaTCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAAtgt                                                   <  1:871610/76‑1 (MQ=255)                           aTCGCCAATCAATAATTCACTGTTGTTTTTTAATTCAAATGTTGCAGCCATATTTACCGTAAGAATTAGTAAtgtg                                                  >  1:987735/1‑76 (MQ=255)                           aTCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAAtgtg                                                  >  1:1600758/1‑76 (MQ=255)                             cGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGAt                                                <  1:777103/76‑1 (MQ=255)                              gCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGAtt                                               <  2:580217/76‑1 (MQ=255)                               ccAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTg                                              >  1:878242/1‑76 (MQ=255)                               ccAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTg                                              >  1:878263/1‑76 (MQ=255)                               ccAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTg                                              >  1:878268/1‑76 (MQ=255)                                 aatcaatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGgt                                            >  1:570798/1‑76 (MQ=255)                                  atcaatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGAAATGTGATTGgtg                                           >  1:910867/1‑76 (MQ=255)                                   tcaatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGgtgt                                          <  1:1444939/76‑1 (MQ=255)                                   tcaatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGgtgt                                          <  1:1444941/76‑1 (MQ=255)                                    caatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTc                                         >  1:1533658/1‑76 (MQ=255)                                    caatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTc                                         >  1:771857/1‑76 (MQ=255)                                    caatAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTc                                         <  2:32287/76‑1 (MQ=255)                                     aataatTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCg                                        >  2:929111/1‑76 (MQ=255)                                      ataatTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTCAGCGTAAGAATTAGTAATGTGCTTGGTGTCgt                                       >  1:1844228/1‑76 (MQ=255)                                       taatTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCgtg                                      >  1:1763454/1‑76 (MQ=255)                                            cACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTaaaa                                 >  1:1436575/1‑76 (MQ=255)                                            cACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTaaaa                                 >  1:700075/1‑76 (MQ=255)                                             aCTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTaaaaa                                >  1:1709378/1‑76 (MQ=255)                                              cTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAt                               <  1:365117/76‑1 (MQ=255)                                              cTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAt                               <  1:1525619/76‑1 (MQ=255)                                                 ttgttTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAtttt                            >  1:33872/1‑76 (MQ=255)                                                 ttgttTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAtttt                            >  1:1397539/1‑76 (MQ=255)                                                 ttgttTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAtttt                            >  1:1674407/1‑76 (MQ=255)                                                 ttgttTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAtttt                            >  1:1674437/1‑76 (MQ=255)                                                  tgttTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAAttttt                           >  1:1254380/1‑76 (MQ=255)                                                     ttATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTtct                        >  1:666749/1‑76 (MQ=255)                                                       ataACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCa                      >  1:1789167/1‑76 (MQ=255)                                                           cTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTa                  <  2:510014/76‑1 (MQ=255)                                                           cTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTa                  >  1:1636002/1‑76 (MQ=255)                                                            tACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTaa                 >  2:1099524/1‑76 (MQ=255)                                                            tACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTaa                 >  2:1099546/1‑76 (MQ=255)                                                            ctaaaTTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTaa                 >  2:337281/4‑76 (MQ=255)                                                            ctaaaTTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTaa                 >  2:337268/4‑76 (MQ=255)                                                             aCAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAAt                >  2:1690971/1‑76 (MQ=255)                                                               aaTTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATta              <  1:225419/76‑1 (MQ=255)                                                                aTTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTTTTATTTAATtat             >  1:1058715/1‑76 (MQ=255)                                                                aTTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATtat             >  1:521103/1‑76 (MQ=255)                                                                 ttgttgCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATtata            <  1:1093110/76‑1 (MQ=255)                                                                  tgttgCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATaa           <  1:973520/76‑1 (MQ=255)                                                                    ttgCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATc         >  2:655994/1‑76 (MQ=255)                                                                      gcagcaATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCtt       <  1:1214153/76‑1 (MQ=255)                                                                       cagcaATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTc      >  1:1067794/1‑76 (MQ=255)                                                                        agcaATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTcc     >  1:807378/1‑76 (MQ=255)                                                                         gcaATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCct    >  1:590830/1‑76 (MQ=255)                                                                         gcaATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCct    >  1:1524106/1‑76 (MQ=255)                                                                           aaTATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCctct  <  2:28449/76‑1 (MQ=255)                                                                           aaTATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCctct  <  1:1741896/76‑1 (MQ=255)                                                                           aaTATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCctct  <  1:1741887/76‑1 (MQ=255)                                                                           |                                                                            ACAGTTTCTGATTTAAACCCCATTAAATCGCCAATCAATAATTCACTGTTGTTTATAACTACAATTGTTGCAGCAATATTAAGCGTAAGAATTAGTAATGTGATTGGTGTCGTGTAAAAATTTTTTCTCATTTAATTATAATCTTCCTCT  >  REL606/2038000‑2038149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.