| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2038074 = | 55 (0.920) | 8 (0.150) | 7/134 | 5.6 | 12.7% | coding (57/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038286 = | 61 (1.140) | coding (663/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2038154‑2038074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatattAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAAATG > REL606/2038286‑2038357 AATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTA < 1:1370734/76‑1AATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTA < 1:812067/76‑1 ATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAA < 1:1425359/76‑1 ATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAA < 1:1425370/76‑1 ATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAA > 1:73179/1‑76 CAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATA > 1:1396547/1‑76 CAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATA < 1:81121/76‑1 AAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATAT < 1:713255/76‑1 AGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATT > 1:1207019/1‑76 AGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATT > 2:397209/1‑76 AGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATT > 1:1206993/1‑76 GAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATT < 2:1734659/76‑1 GAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATT < 2:75577/76‑1 AAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTC < 2:1657069/76‑1 AGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTCG < 2:1228693/76‑1 AAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTCGTTGTTTATCAT < 2:1836861/76‑1 AATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTCGTTGTTTATCATT < 2:1084354/76‑1 GAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTCGTTGTTTATCATTATG < 2:565964/76‑1 AGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATTAATTCGTTGTTTATCATTATGT < 2:466109/76‑1 TAATATTAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAA > 1:845962/1‑76 ATATTAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAAAT < 1:1694082/76‑1 ATATTAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAAAT < 1:1443068/76‑1 TATTAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAAATG > 1:324162/1‑76 AATCAAGAGGAAGATTATAATTAAATGAGAAAAAATTTTTACACGACACCAATCACATTACTAATTCTTACGCTTAATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2038154‑2038074‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatattAATTCGTTGTTTATCATTATGTAACAATTTAGCTTGATACCAAACCGTATCTGTGTCTATATCAATTAAATG > REL606/2038286‑2038357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |