| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039999 | 65 (1.080) | 5 (0.090) | 5/138 | 6.7 | 8.5% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 48 (0.870) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATA > REL606/2039924‑2040073 | tATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAata > 1:1466388/1‑76 (MQ=255)tATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAata > 2:382710/1‑76 (MQ=255)tATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAata > 2:382731/1‑76 (MQ=255) attcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTgag < 1:545406/76‑1 (MQ=255) attcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTgag < 1:545400/76‑1 (MQ=255) attcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTgag < 1:318463/76‑1 (MQ=255) cgtattttcTCTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTGCTGGAATATATTGAGACt < 1:795552/76‑1 (MQ=255) cgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTGCTGGAATATATTGAGACt < 1:795555/76‑1 (MQ=255) tatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCg < 1:38977/76‑1 (MQ=255) tatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCg < 1:38966/76‑1 (MQ=255) tattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCgag < 2:1878874/76‑1 (MQ=255) tattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCgag > 1:1866054/1‑76 (MQ=255) aCTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGaa < 1:307169/76‑1 (MQ=255) cTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGaaa < 2:907628/76‑1 (MQ=255) ttGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAAt > 1:1478202/1‑76 (MQ=255) tGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATg < 2:1415396/76‑1 (MQ=255) ggAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGt < 2:571345/76‑1 (MQ=255) ggAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGt < 2:571359/76‑1 (MQ=255) gAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGtt > 1:27549/1‑76 (MQ=255) gAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGtt > 1:27557/1‑76 (MQ=255) gAACTACTGGATTAGACATATAACTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGtt > 1:27526/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt > 2:705428/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt > 1:1054816/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt < 1:964269/76‑1 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt < 1:746816/76‑1 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGACACTCGAGATGAAATGttt > 1:135787/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACCGGCATATATTGAGATTCGAGCTGAAACGttt > 1:135801/1‑76 (MQ=255) actactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTg < 1:1588344/76‑1 (MQ=255) ctactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGc > 1:358247/1‑76 (MQ=255) tactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCg < 1:1662048/76‑1 (MQ=255) tactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCg < 1:1288697/76‑1 (MQ=255) actGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGt > 2:1389731/1‑76 (MQ=255) actGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGt > 1:1019021/1‑76 (MQ=255) aTTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCa < 2:1386644/76‑1 (MQ=255) aGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGat < 1:1393430/76‑1 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata > 2:661538/1‑76 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata < 1:853290/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 2:359314/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:750151/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:816400/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:816405/76‑1 (MQ=255) atatAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCg > 1:1077689/1‑63 (MQ=255) atatAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCg < 2:1077689/63‑1 (MQ=255) ataATTGCCAGCATAATCATCGTTACTGGAATATATTGAGACTCCCGATGAAATGTTTTCGTAGTCCGCTACAGtt > 1:448357/1‑76 (MQ=255) ataATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGtt > 1:837255/1‑76 (MQ=255) taATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTa > 2:357822/1‑76 (MQ=255) aaTTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTAc < 2:1858278/76‑1 (MQ=255) tGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCATATATAGTTACttt > 1:1404850/1‑76 (MQ=255) cAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTcc < 1:460508/76‑1 (MQ=255) aataatCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCttt < 1:1038529/76‑1 (MQ=255) ataatCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTg < 2:1259213/76‑1 (MQ=255) taatCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGc > 1:941857/1‑76 (MQ=255) catcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaat < 2:1718681/76‑1 (MQ=255) atcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaata > 1:1662085/1‑76 (MQ=255) atcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaata > 1:1427904/1‑76 (MQ=255) tctttACCGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa > 2:1669628/4‑76 (MQ=255) tctttACCGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataa > 2:1669623/4‑76 (MQ=255) gTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAAtt < 1:234861/76‑1 (MQ=255) ttACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTg < 1:1532090/76‑1 (MQ=255) ttACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTg > 1:293515/1‑76 (MQ=255) tACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTga < 2:607906/76‑1 (MQ=255) ttgggAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTgaa > 2:717113/4‑76 (MQ=255) aCTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTgaa > 1:1598464/1‑76 (MQ=255) gAATATATTGAGACTCGCGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAat > 2:894471/1‑76 (MQ=255) gAATATATTGAGACTCGCGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAat > 2:894482/1‑76 (MQ=255) atatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAatat > 1:776088/1‑76 (MQ=255) tatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAAtata < 1:197398/76‑1 (MQ=255) tatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAAtata < 2:1386830/76‑1 (MQ=255) | TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATA > REL606/2039924‑2040073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |