New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 3737261	115 (1.850)	6 (0.100)	5/142	6.6	6.1%	coding (566/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
	?	REL606	= 3737695	76 (1.290)					coding (132/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3737185‑3737261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT  <  REL606/3737695‑3737622                                                                                                                                                         TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTA                                                                             <  1:22344/76‑1  ATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT                                                                            >  2:1529575/1‑76                                       tGCTAAGCATTAAGTTAATTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACA                                       >  2:1928283/2‑76                                                      TAATTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCT                        >  2:1717751/1‑76                                                         TTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACT                     >  2:1135825/1‑76                                                            TATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTG                  >  2:799132/1‑76                                                                TAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAA              >  2:1760600/1‑76                                                                      TGTTTTATATCTGCATTGTATTTTCTAATGACACAAAAAAACACAATAACTAATAATCCTACTTTGTTAATTTTCA        >  2:1381475/1‑76                                                                          TTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTC    <  1:1445651/76‑1                                                                            ATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT  >  2:1635730/1‑76                                                                                                                                                         TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3737185‑3737261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTCATCTCAT  <  REL606/3737695‑3737622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.