| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039596 | 64 (1.030) | 8 (0.150) | 6/130 | 5.7 | 12.3% | coding (99/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | = 2039906 | 59 (1.100) | coding (223/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2039512‑2039596‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtatttataGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTACATGAGGGTGCAGCAATTGGA < REL606/2039906‑2039832 TAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATT > 1:777353/1‑76 AAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTG < 1:935693/76‑1 AGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGT < 1:1936955/76‑1 GAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAT < 1:1030269/76‑1 GAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAT > 2:1644015/1‑76 GAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAT > 2:1563870/1‑76 GAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTAT < 1:959521/76‑1 AAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATT > 2:1800971/1‑76 AGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTT < 1:1244039/76‑1 AGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTT < 2:718941/76‑1 GCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTA < 1:706976/76‑1 CAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTAT < 1:255465/76‑1 CAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTAT < 1:255445/76‑1 CAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTAT < 2:1966982/76‑1 ATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAGGCAAACA > 2:459321/1‑76 ATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGT > 2:593645/1‑76 CTTTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGA > 2:457597/1‑76 TTTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGCTCTCCCGGAT > 2:1615432/1‑76 TTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGCAGTATTGTTACTCCGGCTG > 2:334966/1‑76 TTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATG > 2:627792/1‑76 TTATATTTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATACGTTGCGGAAGTATTGTTCTTCCGGATG > 2:627812/1‑76 TTAGATTCTTTTATTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTT > 2:154230/1‑76 TTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTACATGAGGGTGCAGCAAT > 2:556887/1‑76 AGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTACATGAGGGTGCAGCAATTGGA < 1:1698139/76‑1 TAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2039512‑2039596‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtatttataGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTACATGAGGGTGCAGCAATTGGA < REL606/2039906‑2039832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |