| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3303564 = | 53 (1.030) | 3 (0.060) | 3/144 | 5.3 | 6.2% | coding (798/1368 nt) | dcuD | predicted transporter |
| ? | REL606 | 3335535 = | 40 (0.810) | coding (38/1452 nt) | panF | sodium/panthothenate symporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCGGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGCAGTTCTGACTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3303640‑3303564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcTGGTGGTGGTGTTCGGTATCTCGGTTTATGCGATGCGTAAACGGAGCACCGGCACCTTCCTTAATGAGTATTTCC > REL606/3335535‑3335609 TGCTGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGCAGTTCTGACTGCAT > 2:9419/1‑76TGCGGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGCAGTTCTGACTGCAT > 2:1325122/1‑76TGCGGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGAAGTTCTGACTGCAT > 2:477438/1‑76 GCGGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGCAGTTCTGACTGCATC < 2:1358507/76‑1 CACCACCACCAGATGCAGTTCTGACTGCATCTGGTGGTGGTG > 2:879499/1‑42 CACCACCAGATGCAGTTCTGACTGCATCTGGTGGTG < 2:1281438/36‑1 CACCACCAGATGCAGTTCTGACTGCATCTGGCGGTG > 1:1281438/1‑36 TCTGGTGGTGGTGTTCGGTATCTCGGTTTATGCGATGCGTAAACGGAGCACCGGCACCTTCCTTAATGAGTATTTC < 2:769221/76‑1 CTGGTGGTGGTGTTCGGTATCTCGGTTTATGCGATGCGTAAACGGAGCACCGGCACCTTCCTTAATGAGTATTTCC < 1:1537615/76‑1 TGCGGAAGAACTCAACAAACATCGTCACAGTCAAACTCAGTAACATCACCACCACCAGATGCAGTTCTGACTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3303640‑3303564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcTGGTGGTGGTGTTCGGTATCTCGGTTTATGCGATGCGTAAACGGAGCACCGGCACCTTCCTTAATGAGTATTTCC > REL606/3335535‑3335609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |